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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
792719-792879
(+)
AdoCbl
792879-794979 (+)
Ctha_0685
Anaerobic ribonucleoside-triphosphate reductase
Ctha_0685
Operon
DOOR ID:
454766
Ctha_0685,
Ctha_0686
View Structure
2
881207-881349
(-)
FMN
880414-881101 (-)
Ctha_0748
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Ctha_0748
Single gene
DOOR ID:
2355560
Ctha_0748
View Structure
3
1048428-1048588
(-)
MOCO
1046356-1047271 (+)
Ctha_0874
ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) (F-ATPase gamma subunit)
Ctha_0874
Operon
DOOR ID:
454800
Ctha_0873,
Ctha_0874
View Structure
4
1191648-1191823
(+)
cobalamin
1192049-1194371 (+)
Ctha_1003
TonB-dependent siderophore receptor
Ctha_1003
Single gene
DOOR ID:
2355685
Ctha_1003
View Structure
5
1493806-1493922
(+)
SAM
1494113-1495436 (+)
Ctha_1280
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Ctha_1280
Operon
DOOR ID:
454883
Ctha_1280,
Ctha_1281
View Structure
6
2436089-2436214
(-)
TPP
2434857-2435985 (-)
Ctha_2048
Glycine oxidase ThiO
Ctha_2048
Operon
DOOR ID:
455045
Ctha_2047,
Ctha_2048
View Structure
7
2530551-2530793
(+)
cobalamin
2530956-2532990 (+)
Ctha_2117
TonB-dependent receptor
Ctha_2117
Operon
DOOR ID:
455056
Ctha_2117,
Ctha_2118
View Structure
8
2642337-2642575
(+)
cobalamin
2642801-2644940 (+)
Ctha_2210
TonB-dependent receptor plug
Ctha_2210
Single gene
DOOR ID:
2356224
Ctha_2210
View Structure
9
2669255-2669456
(-)
cobalamin
2667976-2669230 (-)
Ctha_2234
Iron(III) ABC transporter; periplasmic iron-binding protein
Ctha_2234
Single gene
DOOR ID:
2356230
Ctha_2234
View Structure
10
2883309-2883409
(-)
TPP
2880978-2882844 (-)
Ctha_2401
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ctha_2401
Single gene
DOOR ID:
2356318
Ctha_2401
View Structure
11
2947068-2947276
(-)
cobalamin
2945791-2947042 (-)
Ctha_2451
Periplasmic binding protein
Ctha_2451
Operon
DOOR ID:
455124
Ctha_2449,
Ctha_2450,
Ctha_2451
View Structure
Genome:
Chloroherpeton thalassium ATCC 35110
(
NC_011026.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"792719-792879";i:6;s:1:"+";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:13:"792879-794979";i:10;s:1:"+";i:11;s:9:"Ctha_0685";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:9:"Ctha_0685";i:14;s:6:"Operon";i:15;s:6:"454766";i:16;s:19:"Ctha_0685;Ctha_0686";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"881207-881349";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"880414-881101";i:10;s:1:"-";i:11;s:9:"Ctha_0748";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Ctha_0748";i:14;s:11:"Single gene";i:15;s:7:"2355560";i:16;s:9:"Ctha_0748";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1048428-1048588";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1046356-1047271";i:10;s:1:"+";i:11;s:9:"Ctha_0874";i:12;s:88:"ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) (F-ATPase gamma subunit)";i:13;s:9:"Ctha_0874";i:14;s:6:"Operon";i:15;s:6:"454800";i:16;s:19:"Ctha_0873;Ctha_0874";i:17;s:51:"ATP synthesis coupled proton transport [GO:0015986]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1191648-1191823";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1192049-1194371";i:10;s:1:"+";i:11;s:9:"Ctha_1003";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:9:"Ctha_1003";i:14;s:11:"Single gene";i:15;s:7:"2355685";i:16;s:9:"Ctha_1003";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"1493806-1493922";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1494113-1495436";i:10;s:1:"+";i:11;s:9:"Ctha_1280";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Ctha_1280";i:14;s:6:"Operon";i:15;s:6:"454883";i:16;s:19:"Ctha_1280;Ctha_1281";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2436089-2436214";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2434857-2435985";i:10;s:1:"-";i:11;s:9:"Ctha_2048";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Ctha_2048";i:14;s:6:"Operon";i:15;s:6:"455045";i:16;s:19:"Ctha_2047;Ctha_2048";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2530551-2530793";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2530956-2532990";i:10;s:1:"+";i:11;s:9:"Ctha_2117";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Ctha_2117";i:14;s:6:"Operon";i:15;s:6:"455056";i:16;s:19:"Ctha_2117;Ctha_2118";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2642337-2642575";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2642801-2644940";i:10;s:1:"+";i:11;s:9:"Ctha_2210";i:12;s:28:"TonB-dependent receptor plug";i:13;s:9:"Ctha_2210";i:14;s:11:"Single gene";i:15;s:7:"2356224";i:16;s:9:"Ctha_2210";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2669255-2669456";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2667976-2669230";i:10;s:1:"-";i:11;s:9:"Ctha_2234";i:12;s:59:"Iron(III) ABC transporter; periplasmic iron-binding protein";i:13;s:9:"Ctha_2234";i:14;s:11:"Single gene";i:15;s:7:"2356230";i:16;s:9:"Ctha_2234";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2883309-2883409";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2880978-2882844";i:10;s:1:"-";i:11;s:9:"Ctha_2401";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Ctha_2401";i:14;s:11:"Single gene";i:15;s:7:"2356318";i:16;s:9:"Ctha_2401";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011026.1";i:2;s:37:"Chloroherpeton thalassium ATCC 35110 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2947068-2947276";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2945791-2947042";i:10;s:1:"-";i:11;s:9:"Ctha_2451";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Ctha_2451";i:14;s:6:"Operon";i:15;s:6:"455124";i:16;s:29:"Ctha_2449;Ctha_2450;Ctha_2451";i:17;s:0:"";i:18;s:15:"View Structure ";}}
