Genome: Rhodopseudomonas palustris TIE-1 (NC_011004.1); Phylum: Alphaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 33147-33229 (-)ZMP-ZTP31528-33121 (-)purH

Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]		Rpal_0029Single gene

DOOR ID: 2352641		Rpal_0029 (purH) View Structure
2 442490-442686 (-)cobalamin440104-442381 (-)Rpal_0411

TonB-dependent siderophore receptor		Rpal_0411Operon

DOOR ID: 453593		Rpal_0410,
Rpal_0411		 View Structure
3 819924-820122 (+)cobalamin820231-820663 (+)Rpal_0784

Rpal_0784Operon

DOOR ID: 453663		Rpal_0784,
Rpal_0785,
Rpal_0786		 View Structure
4 834100-834315 (-)cobalamin832968-834027 (-)Rpal_0795

Nickel/cobalt efflux system		Rpal_0795Operon

DOOR ID: 453666		Rpal_0793,
Rpal_0794,
Rpal_0795		 View Structure
5 1001550-1001728 (+)SAH1002985-1004023 (+)hemH

Ferrochelatase (Heme synthase) (Protoheme ferro-lyase)		Rpal_0943Single gene

DOOR ID: 2353045		Rpal_0943 (hemH) View Structure
6 1258421-1258621 (+)cobalamin1258810-1259146 (+)Rpal_1186

Rpal_1186Single gene

DOOR ID: 2353142		Rpal_1186 View Structure
7 1702100-1702148 (-)mini-ykkC1701236-1702076 (-)Rpal_1590

Rpal_1590Operon

DOOR ID: 453806		Rpal_1587,
Rpal_1588,
Rpal_1589,
Rpal_1590,
Rpal_1591,
Rpal_1592,
Rpal_1593		 View Structure
8 1704901-1705005 (-)ykkC-yxkD1703754-1704825 (-)Rpal_1593

ABC transporter periplasmic binding protein; urea carboxylase region		Rpal_1593Operon

DOOR ID: 453806		Rpal_1587,
Rpal_1588,
Rpal_1589,
Rpal_1590,
Rpal_1591,
Rpal_1592,
Rpal_1593		 View Structure
9 2555919-2556120 (+)cobalamin2556152-2557085 (+)Rpal_2371

Periplasmic binding protein		Rpal_2371Single gene

DOOR ID: 2353684		Rpal_2371 View Structure
10 2565137-2565341 (-)cobalamin2564463-2565027 (-)Rpal_2381

Rpal_2381Operon

DOOR ID: 453951		Rpal_2378,
Rpal_2379,
Rpal_2380 (cobH),
Rpal_2381		 View Structure
11 2568002-2568213 (+)cobalamin2568418-2569483 (+)Rpal_2384

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (NN:DBI PRT) (1) (N(1)-alpha-phosphoribosyltransferase)		Rpal_2384Operon

DOOR ID: 453953		Rpal_2384,
Rpal_2385,
Rpal_2386,
Rpal_2387		 View Structure
12 2724360-2724403 (-)mini-ykkC2723957-2724272 (-)Rpal_2526

Rpal_2526Single gene

DOOR ID: 2353763		Rpal_2526 View Structure
13 2858143-2858348 (-)cobalamin2855582-2857913 (-)Rpal_2636

TonB-dependent siderophore receptor		Rpal_2636Operon

DOOR ID: 453997		Rpal_2634,
Rpal_2635,
Rpal_2636		 View Structure
14 2863568-2863773 (-)cobalamin2860531-2863456 (-)Rpal_2639

Ribonucleoside-diphosphate reductase 		Rpal_2639Operon

DOOR ID: 453998		Rpal_2638,
Rpal_2639		 View Structure
15 2866775-2866979 (-)cobalamin2864642-2866664 (-)Rpal_2642

Anaerobic ribonucleoside-triphosphate reductase		Rpal_2642Operon

DOOR ID: 453999		Rpal_2640,
Rpal_2641,
Rpal_2642		 View Structure
16 2873932-2874128 (+)cobalamin2874235-2876602 (+)Rpal_2650

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		Rpal_2650Single gene

DOOR ID: 2353800		Rpal_2650 View Structure
17 3332624-3332688 (-)SAH3330810-3331596 (+)Rpal_3088

Rpal_3088Operon

DOOR ID: 454093		Rpal_3087,
Rpal_3088		 View Structure
18 4379730-4379854 (+)SAH4379927-4380128 (-)Rpal_4081

Rpal_4081Single gene

DOOR ID: 2354385		Rpal_4081 View Structure
19 4391074-4391212 (+)TPP4392296-4392494 (+)Rpal_4093

Thiamine biosynthesis protein ThiS		Rpal_4093Operon

DOOR ID: 454273		Rpal_4092,
Rpal_4093		 View Structure
20 4701880-4701970 (+)glycine4702103-4703252 (+)gcvT

Glycine cleavage system T protein		Rpal_4373Single gene

DOOR ID: 2354527		Rpal_4373 (gcvT) View Structure
21 5019692-5019818 (+)SAH5019854-5021258 (-)Rpal_4660

NAD(P) transhydrogenase subunit beta (Nicotinamide nucleotide transhydrogenase subunit beta)		Rpal_4660Operon

DOOR ID: 454374		Rpal_4660,
Rpal_4661,
Rpal_4662		 View Structure
22 5307255-5307334 (-)sam-alpha5305949-5307149 (-)metX

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Rpal_4925Operon

DOOR ID: 454415		Rpal_4924,
Rpal_4925 (metX)		 View Structure
23 5663014-5663093 (+)sam-alpha5663167-5664379 (+)Rpal_5251

O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) 		Rpal_5251Single gene

DOOR ID: 2354982		Rpal_5251 View Structure
24 5706892-5707095 (+)cobalamin5707203-5709225 (+)Rpal_5290

TonB-dependent receptor plug		Rpal_5290Single gene

DOOR ID: 2354997		Rpal_5290 View Structure