About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
494075-494242
(-)
yybP-ykoY
492994-494005 (-)
BCAM0437
Putative sodium/calcium exchanger protein
BCAM0437
Single gene
DOOR ID:
2351199
BCAM0437
View Structure
2
1778358-1778551
(+)
cobalamin
1778767-1780696 (+)
BCAM1593
Vitamin B12 transporter BtuB
BCAM1593
Single gene
DOOR ID:
2351732
BCAM1593
View Structure
3
2816678-2816821
(-)
cobalamin
2816435-2816645 (-)
BCAM2487
Putative membrane protein
BCAM2487
Operon
DOOR ID:
453298
BCAM2486,
BCAM2487
View Structure
Genome:
Burkholderia cenocepacia J2315 chromosome II
(
NC_011001.1
);
Phylum:
Betaproteobacteria
a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011001.1";i:2;s:44:"Burkholderia cenocepacia J2315 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"494075-494242";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"492994-494005";i:10;s:1:"-";i:11;s:8:"BCAM0437";i:12;s:41:"Putative sodium/calcium exchanger protein";i:13;s:8:"BCAM0437";i:14;s:11:"Single gene";i:15;s:7:"2351199";i:16;s:8:"BCAM0437";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011001.1";i:2;s:44:"Burkholderia cenocepacia J2315 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1778358-1778551";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1778767-1780696";i:10;s:1:"+";i:11;s:8:"BCAM1593";i:12;s:28:"Vitamin B12 transporter BtuB";i:13;s:8:"BCAM1593";i:14;s:11:"Single gene";i:15;s:7:"2351732";i:16;s:8:"BCAM1593";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011001.1";i:2;s:44:"Burkholderia cenocepacia J2315 chromosome II";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2816678-2816821";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2816435-2816645";i:10;s:1:"-";i:11;s:8:"BCAM2487";i:12;s:25:"Putative membrane protein";i:13;s:8:"BCAM2487";i:14;s:6:"Operon";i:15;s:6:"453298";i:16;s:17:"BCAM2486;BCAM2487";i:17;s:0:"";i:18;s:15:"View Structure ";}}
