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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
93644-93777
(-)
glycine
92441-93560 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BCAL0075
Operon
DOOR ID:
452114
BCAL0073
(gcvP)
,
BCAL0074
(gcvH)
,
BCAL0075
(gcvT)
View Structure
2
168974-169091
(+)
SAH
169123-170542 (+)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BCAL0145
Single gene
DOOR ID:
2349786
BCAL0145
(ahcY)
View Structure
3
332001-332124
(+)
TPP
332349-333486 (+)
thiO
Putative thiamine biosynthesis oxidoreductase ThiO
BCAL0297
Operon
DOOR ID:
452157
BCAL0297
(thiO)
,
BCAL0298
(thiS)
,
BCAL0299
(thiG)
,
BCAL0300
(thiE)
View Structure
4
997511-997659
(+)
FMN
997849-998488 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BCAL0915
Single gene
DOOR ID:
2350052
BCAL0915
(ribB)
View Structure
5
1210530-1210646
(-)
TPP
1208522-1210454 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BCAL1104
Single gene
DOOR ID:
2350128
BCAL1104
(thiC)
View Structure
6
1882125-1882362
(-)
cobalamin
1881206-1881956 (-)
cobA
Uroporphyrin-III C-methyltransferase (07)
BCAL1708
Operon
DOOR ID:
452450
BCAL1704,
BCAL1705
(cobB)
,
BCAL1706
(cobO)
,
BCAL1707,
BCAL1708
(cobA)
View Structure
7
1884723-1884989
(+)
cobalamin
1885313-1886402 (+)
cobW
Putative cobalamin biosynthesis-related protein
BCAL1710
Operon
DOOR ID:
452451
BCAL1710
(cobW)
,
BCAL1711
(cobN)
,
BCAL1712,
BCAL1713,
BCAL1714,
BCAL1715,
BCAL1716
View Structure
8
1905565-1905757
(-)
cobalamin
1904096-1905458 (-)
BCAL1726
Putative oxidoreductase
BCAL1726
Operon
DOOR ID:
452453
BCAL1723
(cobJ)
,
BCAL1724
(cobI)
,
BCAL1725
(cobH)
,
BCAL1726
View Structure
9
2630522-2630566
(-)
mini-ykkC
2630178-2630499 (-)
sugE
BCAL2376
Single gene
DOOR ID:
2350566
BCAL2376
(sugE)
View Structure
10
2934658-2934907
(-)
cobalamin
2933512-2934508 (-)
BCAL2665
Putative transmembrane ABC transporter permease
BCAL2665
Operon
DOOR ID:
452649
BCAL2664,
BCAL2665
View Structure
11
3280349-3280489
(+)
yybP-ykoY
3280567-3281140 (+)
BCAL2991
Putative membrane protein
BCAL2991
Single gene
DOOR ID:
2350830
BCAL2991
View Structure
12
3494960-3495060
(-)
ZMP-ZTP
3493574-3494822 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BCAL3197
Operon
DOOR ID:
452768
BCAL3196
(nrdR)
,
BCAL3197
(glyA)
View Structure
Genome:
Burkholderia cenocepacia J2315 chromosome I
(
NC_011000.1
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"93644-93777";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:11:"92441-93560";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"BCAL0075";i:14;s:6:"Operon";i:15;s:6:"452114";i:16;s:44:"BCAL0073(gcvP);BCAL0074(gcvH);BCAL0075(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"168974-169091";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"169123-170542";i:10;s:1:"+";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"BCAL0145";i:14;s:11:"Single gene";i:15;s:7:"2349786";i:16;s:14:"BCAL0145(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"332001-332124";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"332349-333486";i:10;s:1:"+";i:11;s:4:"thiO";i:12;s:50:"Putative thiamine biosynthesis oxidoreductase ThiO";i:13;s:8:"BCAL0297";i:14;s:6:"Operon";i:15;s:6:"452157";i:16;s:59:"BCAL0297(thiO);BCAL0298(thiS);BCAL0299(thiG);BCAL0300(thiE)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"997511-997659";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"997849-998488";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"BCAL0915";i:14;s:11:"Single gene";i:15;s:7:"2350052";i:16;s:14:"BCAL0915(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1210530-1210646";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1208522-1210454";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"BCAL1104";i:14;s:11:"Single gene";i:15;s:7:"2350128";i:16;s:14:"BCAL1104(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1882125-1882362";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1881206-1881956";i:10;s:1:"-";i:11;s:4:"cobA";i:12;s:41:"Uroporphyrin-III C-methyltransferase (07)";i:13;s:8:"BCAL1708";i:14;s:6:"Operon";i:15;s:6:"452450";i:16;s:62:"BCAL1704;BCAL1705(cobB);BCAL1706(cobO);BCAL1707;BCAL1708(cobA)";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1884723-1884989";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1885313-1886402";i:10;s:1:"+";i:11;s:4:"cobW";i:12;s:47:"Putative cobalamin biosynthesis-related protein";i:13;s:8:"BCAL1710";i:14;s:6:"Operon";i:15;s:6:"452451";i:16;s:74:"BCAL1710(cobW);BCAL1711(cobN);BCAL1712;BCAL1713;BCAL1714;BCAL1715;BCAL1716";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1905565-1905757";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1904096-1905458";i:10;s:1:"-";i:11;s:8:"BCAL1726";i:12;s:23:"Putative oxidoreductase";i:13;s:8:"BCAL1726";i:14;s:6:"Operon";i:15;s:6:"452453";i:16;s:53:"BCAL1723(cobJ);BCAL1724(cobI);BCAL1725(cobH);BCAL1726";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2630522-2630566";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2630178-2630499";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"BCAL2376";i:14;s:11:"Single gene";i:15;s:7:"2350566";i:16;s:14:"BCAL2376(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2934658-2934907";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2933512-2934508";i:10;s:1:"-";i:11;s:8:"BCAL2665";i:12;s:47:"Putative transmembrane ABC transporter permease";i:13;s:8:"BCAL2665";i:14;s:6:"Operon";i:15;s:6:"452649";i:16;s:17:"BCAL2664;BCAL2665";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3280349-3280489";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3280567-3281140";i:10;s:1:"+";i:11;s:8:"BCAL2991";i:12;s:25:"Putative membrane protein";i:13;s:8:"BCAL2991";i:14;s:11:"Single gene";i:15;s:7:"2350830";i:16;s:8:"BCAL2991";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_011000.1";i:2;s:43:"Burkholderia cenocepacia J2315 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3494960-3495060";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"3493574-3494822";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:8:"BCAL3197";i:14;s:6:"Operon";i:15;s:6:"452768";i:16;s:29:"BCAL3196(nrdR);BCAL3197(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}}
