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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
99651-99830
(-)
lysine
98205-99552 (-)
lysA
LCABL_01000
Operon
DOOR ID:
451477
LCABL_00980
(dapE)
,
LCABL_00990
(dapD)
,
LCABL_01000
(lysA)
View Structure
2
316275-316364
(+)
TPP
316520-317087 (+)
LCABL_03100
LCABL_03100
Operon
DOOR ID:
451516
LCABL_03100,
LCABL_03110
(ABC-NBD)
,
LCABL_03120
View Structure
3
914403-914491
(+)
SMK_box
915786-917280 (+)
LCABL_09440
LCABL_09440
Single gene
DOOR ID:
2348975
LCABL_09440
View Structure
4
1460285-1460448
(+)
ykoK
1460518-1460608 (+)
LCABL_15340
LCABL_15340
Operon
DOOR ID:
451753
LCABL_15340,
LCABL_15350
View Structure
5
1527903-1528021
(+)
FMN
1528117-1528696 (+)
ypaA
LCABL_15930
Single gene
DOOR ID:
2349169
LCABL_15930
(ypaA)
View Structure
6
1914374-1914471
(-)
TPP
1913725-1914331 (-)
orf5
LCABL_19760
Single gene
DOOR ID:
2349268
LCABL_19760
(orf5)
View Structure
7
1998670-1998845
(-)
lysine
1996956-1998411 (-)
lysP
LCABL_20620
Single gene
DOOR ID:
2349304
LCABL_20620
(lysP)
View Structure
8
2175213-2175311
(-)
preQ1-II
2173712-2174432 (+)
LCABL_22360
LCABL_22360
Single gene
DOOR ID:
2349389
LCABL_22360
View Structure
9
2389592-2389686
(-)
THF
2389036-2389555 (-)
LCABL_24340
LCABL_24340
Single gene
DOOR ID:
2349474
LCABL_24340
View Structure
10
2570747-2570801
(-)
fluoride
2570182-2570593 (-)
crcB2
LCABL_26110
Operon
DOOR ID:
451988
LCABL_26100,
LCABL_26110
(crcB2)
View Structure
11
2571522-2571586
(+)
fluoride
2571644-2571905 (+)
eno2
LCABL_26130
Single gene
DOOR ID:
2349556
LCABL_26130
(eno2)
View Structure
12
2994459-2994631
(+)
lysine
2994743-2996342 (+)
glnP
LCABL_30400
Operon
DOOR ID:
452078
LCABL_30400
(glnP)
,
LCABL_30410
View Structure
Genome:
Lactobacillus casei BL23
(
NC_010999.1
);
Phylum:
Firmicutes
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