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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
2289714-2289858
(+)
yybP-ykoY
2289904-2290516 (+)
CJA_1975
CJA_1975
Single gene
DOOR ID:
2347769
CJA_1975
View Structure
2
2435433-2435549
(+)
TPP
2436739-2436943 (+)
thiS
Thiamine biosynthesis protein ThiS
CJA_2107
Operon
DOOR ID:
450797
CJA_2106
(thiO)
,
CJA_2107
(thiS)
,
CJA_2108
(thiG)
View Structure
3
3193184-3193297
(+)
ykkC-yxkD
3193370-3194429 (+)
CJA_2718
ABC transporter; periplasmic substrate-binding protein
CJA_2718
Operon
DOOR ID:
450924
CJA_2718,
CJA_2719,
CJA_2720,
CJA_2721,
CJA_2722,
CJA_2723
View Structure
4
3411688-3411787
(-)
TPP
3410830-3411634 (-)
thiD
Phosphomethylpyrimidine kinase
CJA_2910
Operon
DOOR ID:
450958
CJA_2908,
CJA_2909
(thiC)
,
CJA_2910
(thiD)
View Structure
5
4520280-4520433
(-)
cobalamin
4518310-4520155 (-)
CJA_3775
Putative TonB-dependent receptor
CJA_3775
Single gene
DOOR ID:
2347487
CJA_3775
View Structure
Genome:
Cellvibrio japonicus Ueda107
(
NC_010995.1
);
Phylum:
Gammaproteobacteria
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