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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
593594-593672
(-)
sam-alpha
592365-593550 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
RHECIAT_CH0000596
Single gene
DOOR ID:
2344508
RHECIAT_CH0000596
(metZ)
View Structure
2
1656722-1656874
(+)
FMN
1656958-1657867 (+)
RHECIAT_CH0001663
Putative permease protein
RHECIAT_CH0001663
Single gene
DOOR ID:
2345051
RHECIAT_CH0001663
View Structure
3
2351389-2351481
(+)
glycine
2351704-2352775 (+)
gcvT
Aminomethyltransferase protein (0)
RHECIAT_CH0002350
Operon
DOOR ID:
449991
RHECIAT_CH0002350
(gcvT)
,
RHECIAT_CH0002351
(gcvH)
,
RHECIAT_CH0002352
(gcvP)
View Structure
4
2467526-2467713
(-)
cobalamin
2466794-2467484 (-)
RHECIAT_CH0002455
Probable nitroreductase protein
RHECIAT_CH0002455
Single gene
DOOR ID:
2345404
RHECIAT_CH0002455
View Structure
5
2603105-2603499
(-)
cobalamin
2602281-2602803 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
RHECIAT_CH0002594
Operon
DOOR ID:
450034
RHECIAT_CH0002591
(cobO)
,
RHECIAT_CH0002592
(cobN)
,
RHECIAT_CH0002593
(cobW)
,
RHECIAT_CH0002594
(cobU)
,
RHECIAT_CH0002595
View Structure
6
2818939-2819083
(+)
FMN
2819163-2819598 (+)
ribH2
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
RHECIAT_CH0002825
Single gene
DOOR ID:
2345634
RHECIAT_CH0002825
(ribH2)
View Structure
7
3710044-3710194
(-)
cobalamin
3709807-3710017 (-)
RHECIAT_CH0003674
Hypothetical conserved protein
RHECIAT_CH0003674
Operon
DOOR ID:
450223
RHECIAT_CH0003672,
RHECIAT_CH0003673,
RHECIAT_CH0003674
View Structure
8
4052332-4052558
(-)
cobalamin
4051851-4052073 (-)
nrdH
Glutaredoxin protein
RHECIAT_CH0003991
Operon
DOOR ID:
450279
RHECIAT_CH0003990
(nrdI)
,
RHECIAT_CH0003991
(nrdH)
View Structure
9
4217800-4217913
(+)
TPP
4218121-4218928 (+)
RHECIAT_CH0004145
Putative nitrate/sulfonate/bicarbonate ABC transporter; permease protein
RHECIAT_CH0004145
Operon
DOOR ID:
450314
RHECIAT_CH0004145,
RHECIAT_CH0004146
View Structure
10
4402272-4402349
(+)
sam-alpha
4402398-4403322 (+)
metA
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
RHECIAT_CH0004322
Single gene
DOOR ID:
2346344
RHECIAT_CH0004322
(metA)
View Structure
Genome:
Rhizobium etli CIAT 652
(
NC_010994.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1656722-1656874";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1656958-1657867";i:10;s:1:"+";i:11;s:17:"RHECIAT_CH0001663";i:12;s:25:"Putative permease protein";i:13;s:17:"RHECIAT_CH0001663";i:14;s:11:"Single gene";i:15;s:7:"2345051";i:16;s:17:"RHECIAT_CH0001663";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2351389-2351481";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2351704-2352775";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:34:"Aminomethyltransferase protein (0)";i:13;s:17:"RHECIAT_CH0002350";i:14;s:6:"Operon";i:15;s:6:"449991";i:16;s:71:"RHECIAT_CH0002350(gcvT);RHECIAT_CH0002351(gcvH);RHECIAT_CH0002352(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2467526-2467713";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2466794-2467484";i:10;s:1:"-";i:11;s:17:"RHECIAT_CH0002455";i:12;s:32:"Probable nitroreductase protein ";i:13;s:17:"RHECIAT_CH0002455";i:14;s:11:"Single gene";i:15;s:7:"2345404";i:16;s:17:"RHECIAT_CH0002455";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2603105-2603499";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2602281-2602803";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:17:"RHECIAT_CH0002594";i:14;s:6:"Operon";i:15;s:6:"450034";i:16;s:113:"RHECIAT_CH0002591(cobO);RHECIAT_CH0002592(cobN);RHECIAT_CH0002593(cobW);RHECIAT_CH0002594(cobU);RHECIAT_CH0002595";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2818939-2819083";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2819163-2819598";i:10;s:1:"+";i:11;s:5:"ribH2";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:17:"RHECIAT_CH0002825";i:14;s:11:"Single gene";i:15;s:7:"2345634";i:16;s:24:"RHECIAT_CH0002825(ribH2)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3710044-3710194";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3709807-3710017";i:10;s:1:"-";i:11;s:17:"RHECIAT_CH0003674";i:12;s:30:"Hypothetical conserved protein";i:13;s:17:"RHECIAT_CH0003674";i:14;s:6:"Operon";i:15;s:6:"450223";i:16;s:53:"RHECIAT_CH0003672;RHECIAT_CH0003673;RHECIAT_CH0003674";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4052332-4052558";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4051851-4052073";i:10;s:1:"-";i:11;s:4:"nrdH";i:12;s:20:"Glutaredoxin protein";i:13;s:17:"RHECIAT_CH0003991";i:14;s:6:"Operon";i:15;s:6:"450279";i:16;s:47:"RHECIAT_CH0003990(nrdI);RHECIAT_CH0003991(nrdH)";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4217800-4217913";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4218121-4218928";i:10;s:1:"+";i:11;s:17:"RHECIAT_CH0004145";i:12;s:72:"Putative nitrate/sulfonate/bicarbonate ABC transporter; permease protein";i:13;s:17:"RHECIAT_CH0004145";i:14;s:6:"Operon";i:15;s:6:"450314";i:16;s:35:"RHECIAT_CH0004145;RHECIAT_CH0004146";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010994.1";i:2;s:24:"Rhizobium etli CIAT 652 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4402272-4402349";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4402398-4403322";i:10;s:1:"+";i:11;s:4:"metA";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:17:"RHECIAT_CH0004322";i:14;s:11:"Single gene";i:15;s:7:"2346344";i:16;s:23:"RHECIAT_CH0004322(metA)";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}}
