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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
200170-200265
(-)
TPP
197908-200098 (-)
Smlt0190
Putative TonB dependent receptor protein
Smlt0190
Operon
DOOR ID:
448442
Smlt0189,
Smlt0190
View Structure
2
274492-274721
(-)
cobalamin
273644-274331 (-)
Smlt0258
Epoxyqueuosine reductase QueH (Queuosine biosynthesis protein QueH)
Smlt0258
Operon
DOOR ID:
448454
Smlt0257
(pncA)
,
Smlt0258
View Structure
3
596338-596561
(-)
cobalamin
594381-596223 (-)
Smlt0585
Putative vitamin B12 receptor protein
Smlt0585
Single gene
DOOR ID:
2342248
Smlt0585
View Structure
4
760965-761110
(+)
FMN
761184-761811 (+)
ribE
Putative riboflavin synthase alpha chain
Smlt0727
Operon
DOOR ID:
448547
Smlt0727
(ribE)
,
Smlt0728
(ribB)
View Structure
5
812575-812658
(-)
SAH
811092-812538 (-)
sahH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Smlt0775
Single gene
DOOR ID:
2342310
Smlt0775
(sahH)
View Structure
6
1735635-1735698
(-)
fluoride
1735159-1735552 (-)
Smlt1683
Putative fluoride ion transporter CrcB
Smlt1683
Single gene
DOOR ID:
2342603
Smlt1683
View Structure
7
3630407-3630509
(+)
glycine
3630571-3633439 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Smlt3579
Single gene
DOOR ID:
2343230
Smlt3579
(gcvP)
View Structure
8
3695422-3695540
(-)
SAM
3694312-3695344 (-)
met2
Putative homoserine O-acetyltransferase (1)
Smlt3635
Operon
DOOR ID:
449144
Smlt3633
(thrA)
,
Smlt3634
(metB)
,
Smlt3635
(met2)
View Structure
9
4001687-4001787
(-)
TPP
3999759-4001604 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Smlt3909
Single gene
DOOR ID:
2343353
Smlt3909
(thiC)
View Structure
10
4318249-4318338
(+)
glycine
4318536-4319157 (+)
Smlt4202
Putative transmembrane protein
Smlt4202
Single gene
DOOR ID:
2343472
Smlt4202
View Structure
11
4318352-4318455
(+)
glycine
4318536-4319157 (+)
Smlt4202
Putative transmembrane protein
Smlt4202
Single gene
DOOR ID:
2343472
Smlt4202
View Structure
12
4750707-4750796
(+)
yybP-ykoY
4750884-4751460 (+)
Smlt4626
Putative manganese efflux pump MntP
Smlt4626
Single gene
DOOR ID:
2343625
Smlt4626
View Structure
13
4845301-4845391
(-)
SAH
4843051-4844167 (-)
Smlt4690
Putative glycerophosphoryl diester phosphodiesterase
Smlt4690
Single gene
DOOR ID:
2343649
Smlt4690
View Structure
Genome:
Stenotrophomonas maltophilia K279a
(
NC_010943.1
);
Phylum:
Gammaproteobacteria
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tRNA processing [GO:0008033]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"596338-596561";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"594381-596223";i:10;s:1:"-";i:11;s:8:"Smlt0585";i:12;s:37:"Putative vitamin B12 receptor protein";i:13;s:8:"Smlt0585";i:14;s:11:"Single gene";i:15;s:7:"2342248";i:16;s:8:"Smlt0585";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"760965-761110";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"761184-761811";i:10;s:1:"+";i:11;s:4:"ribE";i:12;s:41:"Putative riboflavin synthase alpha chain ";i:13;s:8:"Smlt0727";i:14;s:6:"Operon";i:15;s:6:"448547";i:16;s:29:"Smlt0727(ribE);Smlt0728(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"812575-812658";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"811092-812538";i:10;s:1:"-";i:11;s:4:"sahH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"Smlt0775";i:14;s:11:"Single gene";i:15;s:7:"2342310";i:16;s:14:"Smlt0775(sahH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1735635-1735698";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1735159-1735552";i:10;s:1:"-";i:11;s:8:"Smlt1683";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:8:"Smlt1683";i:14;s:11:"Single gene";i:15;s:7:"2342603";i:16;s:8:"Smlt1683";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3630407-3630509";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3630571-3633439";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:8:"Smlt3579";i:14;s:11:"Single gene";i:15;s:7:"2343230";i:16;s:14:"Smlt3579(gcvP)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3695422-3695540";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3694312-3695344";i:10;s:1:"-";i:11;s:4:"met2";i:12;s:43:"Putative homoserine O-acetyltransferase (1)";i:13;s:8:"Smlt3635";i:14;s:6:"Operon";i:15;s:6:"449144";i:16;s:44:"Smlt3633(thrA);Smlt3634(metB);Smlt3635(met2)";i:17;s:53:"cellular amino acid biosynthetic process [GO:0008652]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4001687-4001787";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3999759-4001604";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"Smlt3909";i:14;s:11:"Single gene";i:15;s:7:"2343353";i:16;s:14:"Smlt3909(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4318249-4318338";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4318536-4319157";i:10;s:1:"+";i:11;s:8:"Smlt4202";i:12;s:30:"Putative transmembrane protein";i:13;s:8:"Smlt4202";i:14;s:11:"Single gene";i:15;s:7:"2343472";i:16;s:8:"Smlt4202";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4318352-4318455";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4318536-4319157";i:10;s:1:"+";i:11;s:8:"Smlt4202";i:12;s:30:"Putative transmembrane protein";i:13;s:8:"Smlt4202";i:14;s:11:"Single gene";i:15;s:7:"2343472";i:16;s:8:"Smlt4202";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4750707-4750796";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"4750884-4751460";i:10;s:1:"+";i:11;s:8:"Smlt4626";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:8:"Smlt4626";i:14;s:11:"Single gene";i:15;s:7:"2343625";i:16;s:8:"Smlt4626";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010943.1";i:2;s:35:"Stenotrophomonas maltophilia K279a ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4845301-4845391";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4843051-4844167";i:10;s:1:"-";i:11;s:8:"Smlt4690";i:12;s:52:"Putative glycerophosphoryl diester phosphodiesterase";i:13;s:8:"Smlt4690";i:14;s:11:"Single gene";i:15;s:7:"2343649";i:16;s:8:"Smlt4690";i:17;s:36:"lipid metabolic process [GO:0006629]";i:18;s:15:"View Structure ";}}
