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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
158789-158884
(+)
preQ1-II
159433-160036 (-)
APP7_0140
3-isopropylmalate dehydratase small subunit (3) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase)
APP7_0140
Operon
DOOR ID:
447967
APP7_0140,
APP7_0141
View Structure
2
199537-199633
(+)
TPP
199701-200667 (+)
APP7_0176
Thiamine-binding periplasmic protein
APP7_0176
Single gene
DOOR ID:
2341323
APP7_0176
View Structure
3
464343-464468
(+)
FMN
464555-465695 (+)
APP7_0406
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
APP7_0406
Operon
DOOR ID:
448024
APP7_0406,
APP7_0407,
APP7_0408,
APP7_0409
View Structure
4
590169-590340
(+)
lysine
590465-591983 (+)
APP7_0526
Putative integral membrane protein
APP7_0526
Single gene
DOOR ID:
2341438
APP7_0526
View Structure
5
634945-635037
(+)
TPP
635346-635871 (+)
APP7_0569
Phosphate import ATP-binding protein pstB (7)
APP7_0569
Operon
DOOR ID:
448063
APP7_0569,
APP7_0570,
APP7_0571,
APP7_0572
View Structure
6
816990-817159
(-)
MOCO
814496-816971 (-)
APP7_0730
Trimethylamine-N-oxide reductase
APP7_0730
Single gene
DOOR ID:
2341496
APP7_0730
View Structure
7
818459-818646
(+)
MOCO
819941-820418 (+)
APP7_0733
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
APP7_0733
Operon
DOOR ID:
448102
APP7_0733,
APP7_0734,
APP7_0735,
APP7_0736,
APP7_0737
View Structure
8
847712-847894
(+)
lysine
847991-849344 (+)
APP7_0752
Aspartokinase
APP7_0752
Single gene
DOOR ID:
2341507
APP7_0752
View Structure
9
1299961-1300022
(+)
PreQ1
1300025-1300694 (+)
APP7_1153
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
APP7_1153
Operon
DOOR ID:
448192
APP7_1153,
APP7_1154
View Structure
10
1338218-1338324
(-)
glycine
1336741-1338109 (-)
APP7_1185
Predicted Na+/alanine symporter
APP7_1185
Operon
DOOR ID:
448197
APP7_1181,
APP7_1182,
APP7_1183,
APP7_1184,
APP7_1185
View Structure
Genome:
Actinobacillus pleuropneumoniae serovar 7 str. AP76
(
NC_010939.1
);
Phylum:
Gammaproteobacteria
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AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"158789-158884";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"159433-160036";i:10;s:1:"-";i:11;s:9:"APP7_0140";i:12;s:104:"3-isopropylmalate dehydratase small subunit (3) (Alpha-IPM isomerase) (IPMI) (Isopropylmalate isomerase)";i:13;s:9:"APP7_0140";i:14;s:6:"Operon";i:15;s:6:"447967";i:16;s:19:"APP7_0140;APP7_0141";i:17;s:41:"leucine biosynthetic process [GO:0009098]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"199537-199633";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"199701-200667";i:10;s:1:"+";i:11;s:9:"APP7_0176";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:9:"APP7_0176";i:14;s:11:"Single gene";i:15;s:7:"2341323";i:16;s:9:"APP7_0176";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"464343-464468";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"464555-465695";i:10;s:1:"+";i:11;s:9:"APP7_0406";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"APP7_0406";i:14;s:6:"Operon";i:15;s:6:"448024";i:16;s:39:"APP7_0406;APP7_0407;APP7_0408;APP7_0409";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"590169-590340";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"590465-591983";i:10;s:1:"+";i:11;s:9:"APP7_0526";i:12;s:34:"Putative integral membrane protein";i:13;s:9:"APP7_0526";i:14;s:11:"Single gene";i:15;s:7:"2341438";i:16;s:9:"APP7_0526";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"634945-635037";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"635346-635871";i:10;s:1:"+";i:11;s:9:"APP7_0569";i:12;s:45:"Phosphate import ATP-binding protein pstB (7)";i:13;s:9:"APP7_0569";i:14;s:6:"Operon";i:15;s:6:"448063";i:16;s:39:"APP7_0569;APP7_0570;APP7_0571;APP7_0572";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"816990-817159";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"814496-816971";i:10;s:1:"-";i:11;s:9:"APP7_0730";i:12;s:33:"Trimethylamine-N-oxide reductase ";i:13;s:9:"APP7_0730";i:14;s:11:"Single gene";i:15;s:7:"2341496";i:16;s:9:"APP7_0730";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"818459-818646";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"819941-820418";i:10;s:1:"+";i:11;s:9:"APP7_0733";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:9:"APP7_0733";i:14;s:6:"Operon";i:15;s:6:"448102";i:16;s:49:"APP7_0733;APP7_0734;APP7_0735;APP7_0736;APP7_0737";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"847712-847894";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"847991-849344";i:10;s:1:"+";i:11;s:9:"APP7_0752";i:12;s:14:"Aspartokinase ";i:13;s:9:"APP7_0752";i:14;s:11:"Single gene";i:15;s:7:"2341507";i:16;s:9:"APP7_0752";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1299961-1300022";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1300025-1300694";i:10;s:1:"+";i:11;s:9:"APP7_1153";i:12;s:126:"7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)";i:13;s:9:"APP7_1153";i:14;s:6:"Operon";i:15;s:6:"448192";i:16;s:19:"APP7_1153;APP7_1154";i:17;s:43:"queuosine biosynthetic process [GO:0008616]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010939.1";i:2;s:51:"Actinobacillus pleuropneumoniae serovar 7 str. AP76";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1338218-1338324";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1336741-1338109";i:10;s:1:"-";i:11;s:9:"APP7_1185";i:12;s:31:"Predicted Na+/alanine symporter";i:13;s:9:"APP7_1185";i:14;s:6:"Operon";i:15;s:6:"448197";i:16;s:49:"APP7_1181;APP7_1182;APP7_1183;APP7_1184;APP7_1185";i:17;s:0:"";i:18;s:15:"View Structure ";}}