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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
69668-69819
(-)
FMN
69007-69661 (-)
BLD_0056
Riboflavin transporter
BLD_0056
Single gene
DOOR ID:
2337418
BLD_0056
View Structure
2
159231-159339
(-)
TPP
155459-158213 (-)
thiE
Multifunctional fusion protein [Includes: Phosphomethylpyrimidine synthase (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)]
BLD_0132
Single gene
DOOR ID:
2337463
BLD_0132
(thiE)
View Structure
3
622220-622351
(-)
TPP
621048-621681 (+)
BLD_0541
Putative esterase
BLD_0541
Single gene
DOOR ID:
2337628
BLD_0541
View Structure
4
928349-928452
(-)
TPP
927979-928174 (-)
thiS
Sulfur transfer protein for thiamine biosynthesis
BLD_0808
Operon
DOOR ID:
446068
BLD_0806
(thiF)
,
BLD_0807
(thiG)
,
BLD_0808
(thiS)
View Structure
5
946221-946325
(-)
TPP
945516-946116 (-)
BLD_0823
Hypothetical membrane protein
BLD_0823
Operon
DOOR ID:
446071
BLD_0821
(cbiQ2)
,
BLD_0822
(cbiO3)
,
BLD_0823
View Structure
6
969434-969503
(+)
fluoride
969565-970102 (+)
crcB1
Putative fluoride ion transporter CrcB
BLD_0845
Operon
DOOR ID:
446075
BLD_0845
(crcB1)
,
BLD_0846
(crcB2)
,
BLD_0847
View Structure
7
1511853-1511949
(-)
TPP
1510452-1511805 (-)
uraA3
Xanthine/uracil permease
BLD_1309
Operon
DOOR ID:
446164
BLD_1307
(luxC)
,
BLD_1308
(paaK)
,
BLD_1309
(uraA3)
View Structure
Genome:
Bifidobacterium longum DJO10A
(
NC_010816.1
);
Phylum:
Actinobacteria
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