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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
37261-37360
(+)
TPP
37415-37616 (+)
Glov_0035
Thiamine biosynthesis protein ThiS
Glov_0035
Operon
DOOR ID:
445102
Glov_0035,
Glov_0036
(thiG)
,
Glov_0037
View Structure
2
213134-213210
(-)
c-di-GMP-I
212088-212919 (-)
Glov_0228
Uncharacterized protein
Glov_0228
operon
DOOR ID:
445149
Glov_0227,
Glov_0228
View Structure
3
645064-645139
(+)
c-di-GMP-I
645300-647379 (+)
Glov_0642
Fibronectin type III domain protein
Glov_0642
single gene
DOOR ID:
2336588
Glov_0642
View Structure
4
1534105-1534181
(-)
c-di-GMP-I
1531497-1533879 (-)
Glov_1468
Uncharacterized protein
Glov_1468
single gene
DOOR ID:
2336805
Glov_1468
View Structure
5
1896810-1896990
(+)
cobalamin
1897133-1899143 (+)
Glov_1779
Anaerobic ribonucleoside-triphosphate reductase
Glov_1779
Operon
DOOR ID:
445481
Glov_1779,
Glov_1780,
Glov_1781
View Structure
6
2145975-2146051
(-)
c-di-GMP-I
2145518-2145887 (-)
Glov_2016
Uncharacterized protein
Glov_2016
single gene
DOOR ID:
2336922
Glov_2016
View Structure
7
2534760-2534834
(-)
c-di-GMP-I
2534372-2534591 (+)
Glov_2357
Uncharacterized protein
Glov_2357
single gene
DOOR ID:
2337002
Glov_2357
View Structure
8
2965828-2965928
(+)
TPP
2965995-2967474 (+)
Glov_2763
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Glov_2763
Operon
DOOR ID:
445699
Glov_2763,
Glov_2764
View Structure
9
3288078-3288187
(+)
SAM
3288275-3289412 (+)
Glov_3070
Cystathionine gamma-synthase (8)
Glov_3070
Operon
DOOR ID:
445770
Glov_3070,
Glov_3071
View Structure
10
3302477-3302608
(+)
cobalamin
3302715-3303249 (+)
Glov_3081
Bifunctional adenosylcobalamin biosynthesis protein (2)
Glov_3081
Operon
DOOR ID:
445774
Glov_3081,
Glov_3082
(cobT)
,
Glov_3083,
Glov_3084
View Structure
11
3739157-3739264
(+)
SAM
3739330-3740434 (+)
Glov_3478
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Glov_3478
Operon
DOOR ID:
445856
Glov_3478,
Glov_3479,
Glov_3480
(ispF)
,
Glov_3481,
Glov_3482
View Structure
Genome:
Geobacter lovleyi SZ
(
NC_010814.1
);
Phylum:
delta/epsilon subdivisions
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010814.1";i:2;s:21:"Geobacter lovleyi SZ ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3288078-3288187";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3288275-3289412";i:10;s:1:"+";i:11;s:9:"Glov_3070";i:12;s:32:"Cystathionine gamma-synthase (8)";i:13;s:9:"Glov_3070";i:14;s:6:"Operon";i:15;s:6:"445770";i:16;s:19:"Glov_3070;Glov_3071";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010814.1";i:2;s:21:"Geobacter lovleyi SZ ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3302477-3302608";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3302715-3303249";i:10;s:1:"+";i:11;s:9:"Glov_3081";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:9:"Glov_3081";i:14;s:6:"Operon";i:15;s:6:"445774";i:16;s:45:"Glov_3081;Glov_3082(cobT);Glov_3083;Glov_3084";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010814.1";i:2;s:21:"Geobacter lovleyi SZ ";i:3;s:26:"delta/epsilon subdivisions";i:4;s:5:"68525";i:5;s:15:"3739157-3739264";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3739330-3740434";i:10;s:1:"+";i:11;s:9:"Glov_3478";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Glov_3478";i:14;s:6:"Operon";i:15;s:6:"445856";i:16;s:55:"Glov_3478;Glov_3479;Glov_3480(ispF);Glov_3481;Glov_3482";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}}
