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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
718103-718202
(+)
ZMP-ZTP
718338-719586 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
BMULJ_00657
Operon
DOOR ID:
444214
BMULJ_00657
(glyA)
,
BMULJ_00658
(nrdR)
View Structure
2
933068-933252
(-)
yybP-ykoY
932454-933027 (-)
BMULJ_00863
Putative membrane protein
BMULJ_00863
Single gene
DOOR ID:
2334574
BMULJ_00863
View Structure
3
1247319-1247436
(-)
TPP
1245266-1247198 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BMULJ_01163
Single gene
DOOR ID:
2334680
BMULJ_01163
(thiC)
View Structure
4
1785285-1785518
(-)
cobalamin
1784347-1785112 (-)
cysG
Uroporphyrin-III C-methyltransferase
BMULJ_01658
Operon
DOOR ID:
444402
BMULJ_01655
(cobB)
,
BMULJ_01656
(cobO)
,
BMULJ_01657,
BMULJ_01658
(cysG)
View Structure
5
1785581-1785840
(+)
cobalamin
1786011-1787070 (+)
nixA
Nickel/cobalt efflux system
BMULJ_01659
Single gene
DOOR ID:
2334850
BMULJ_01659
(nixA)
View Structure
6
1805855-1806044
(-)
cobalamin
1804368-1805787 (-)
cobG
Precorrin-3B synthase
BMULJ_01676
Operon
DOOR ID:
444405
BMULJ_01673
(cobJ)
,
BMULJ_01674
(cobI)
,
BMULJ_01675
(cobH)
,
BMULJ_01676
(cobG)
View Structure
7
2432927-2432971
(-)
mini-ykkC
2432583-2432904 (-)
BMULJ_02268
BMULJ_02268
Single gene
DOOR ID:
2335062
BMULJ_02268
View Structure
8
2609616-2609870
(-)
cobalamin
2608089-2609103 (-)
BMULJ_02419
Iron complex transport system permease protein
BMULJ_02419
Operon
DOOR ID:
444565
BMULJ_02415,
BMULJ_02416
(cobS)
,
BMULJ_02417
(cobT)
,
BMULJ_02418,
BMULJ_02419
View Structure
9
2856668-2856816
(-)
FMN
2855838-2856549 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BMULJ_02651
Single gene
DOOR ID:
2335234
BMULJ_02651
(ribB)
View Structure
10
3177460-3177581
(-)
TPP
3176101-3177238 (-)
thiO
Thiamine biosynthesis oxidoreductase
BMULJ_02941
Operon
DOOR ID:
444668
BMULJ_02938
(thiE)
,
BMULJ_02939
(thiG)
,
BMULJ_02940
(thiS)
,
BMULJ_02941
(thiO)
View Structure
11
3321662-3321776
(-)
SAH
3320208-3321627 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
BMULJ_03084
Single gene
DOOR ID:
2335379
BMULJ_03084
(ahcY)
View Structure
12
3363244-3363347
(+)
glycine
3363597-3364716 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMULJ_03122
Operon
DOOR ID:
444700
BMULJ_03122
(gcvT)
,
BMULJ_03123
(gcvH)
View Structure
13
3363382-3363513
(+)
glycine
3363597-3364716 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BMULJ_03122
Operon
DOOR ID:
444700
BMULJ_03122
(gcvT)
,
BMULJ_03123
(gcvH)
View Structure
Genome:
Burkholderia multivorans ATCC 17616 chromosome I
(
NC_010804.1
);
Phylum:
Betaproteobacteria
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"718103-718202";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"718338-719586";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:11:"BMULJ_00657";i:14;s:6:"Operon";i:15;s:6:"444214";i:16;s:35:"BMULJ_00657(glyA);BMULJ_00658(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"933068-933252";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"932454-933027";i:10;s:1:"-";i:11;s:11:"BMULJ_00863";i:12;s:25:"Putative membrane protein";i:13;s:11:"BMULJ_00863";i:14;s:11:"Single gene";i:15;s:7:"2334574";i:16;s:11:"BMULJ_00863";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1247319-1247436";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1245266-1247198";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"BMULJ_01163";i:14;s:11:"Single gene";i:15;s:7:"2334680";i:16;s:17:"BMULJ_01163(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1785285-1785518";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1784347-1785112";i:10;s:1:"-";i:11;s:4:"cysG";i:12;s:36:"Uroporphyrin-III C-methyltransferase";i:13;s:11:"BMULJ_01658";i:14;s:6:"Operon";i:15;s:6:"444402";i:16;s:65:"BMULJ_01655(cobB);BMULJ_01656(cobO);BMULJ_01657;BMULJ_01658(cysG)";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1785581-1785840";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1786011-1787070";i:10;s:1:"+";i:11;s:4:"nixA";i:12;s:27:"Nickel/cobalt efflux system";i:13;s:11:"BMULJ_01659";i:14;s:11:"Single gene";i:15;s:7:"2334850";i:16;s:17:"BMULJ_01659(nixA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1805855-1806044";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1804368-1805787";i:10;s:1:"-";i:11;s:4:"cobG";i:12;s:21:"Precorrin-3B synthase";i:13;s:11:"BMULJ_01676";i:14;s:6:"Operon";i:15;s:6:"444405";i:16;s:71:"BMULJ_01673(cobJ);BMULJ_01674(cobI);BMULJ_01675(cobH);BMULJ_01676(cobG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2432927-2432971";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2432583-2432904";i:10;s:1:"-";i:11;s:11:"BMULJ_02268";i:12;s:0:"";i:13;s:11:"BMULJ_02268";i:14;s:11:"Single gene";i:15;s:7:"2335062";i:16;s:11:"BMULJ_02268";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2609616-2609870";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2608089-2609103";i:10;s:1:"-";i:11;s:11:"BMULJ_02419";i:12;s:46:"Iron complex transport system permease protein";i:13;s:11:"BMULJ_02419";i:14;s:6:"Operon";i:15;s:6:"444565";i:16;s:71:"BMULJ_02415;BMULJ_02416(cobS);BMULJ_02417(cobT);BMULJ_02418;BMULJ_02419";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2856668-2856816";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2855838-2856549";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"BMULJ_02651";i:14;s:11:"Single gene";i:15;s:7:"2335234";i:16;s:17:"BMULJ_02651(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3177460-3177581";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3176101-3177238";i:10;s:1:"-";i:11;s:4:"thiO";i:12;s:36:"Thiamine biosynthesis oxidoreductase";i:13;s:11:"BMULJ_02941";i:14;s:6:"Operon";i:15;s:6:"444668";i:16;s:71:"BMULJ_02938(thiE);BMULJ_02939(thiG);BMULJ_02940(thiS);BMULJ_02941(thiO)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3321662-3321776";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3320208-3321627";i:10;s:1:"-";i:11;s:4:"ahcY";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:11:"BMULJ_03084";i:14;s:11:"Single gene";i:15;s:7:"2335379";i:16;s:17:"BMULJ_03084(ahcY)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3363244-3363347";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3363597-3364716";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BMULJ_03122";i:14;s:6:"Operon";i:15;s:6:"444700";i:16;s:35:"BMULJ_03122(gcvT);BMULJ_03123(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010804.1";i:2;s:48:"Burkholderia multivorans ATCC 17616 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3363382-3363513";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3363597-3364716";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:11:"BMULJ_03122";i:14;s:6:"Operon";i:15;s:6:"444700";i:16;s:35:"BMULJ_03122(gcvT);BMULJ_03123(gcvH)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}}
