About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
59171-59283
(+)
TPP
59308-61252 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Minf_0066
Single gene
DOOR ID:
2332006
Minf_0066
(thiC)
View Structure
2
1171211-1171325
(+)
SAM
1171573-1172638 (+)
thrC
Threonine synthase
Minf_1248
Operon
DOOR ID:
1307952
Minf_1250
(napF)
,
Minf_1249
(moaD)
,
Minf_1248
(thrC)
View Structure
3
1993796-1993891
(+)
fluoride
1994005-1995667 (+)
tolC
Outer membrane protein
Minf_2150
Single gene
DOOR ID:
2332815
Minf_2150
(tolC)
View Structure
4
1995740-1995815
(+)
fluoride
1996115-1997456 (+)
proP
Inner membrane component of tripartite multidrug resistance system
Minf_2152
Operon
DOOR ID:
1308146
Minf_2153,
Minf_2152
(proP)
View Structure
Genome:
Methylacidiphilum infernorum V4
(
NC_010794.1
);
Phylum:
Verrucomicrobia
a:5:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010794.1";i:2;s:31:"Methylacidiphilum infernorum V4";i:3;s:15:"Verrucomicrobia";i:4;s:5:"74201";i:5;s:11:"59171-59283";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"59308-61252";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Minf_0066";i:14;s:11:"Single gene";i:15;s:7:"2332006";i:16;s:15:"Minf_0066(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010794.1";i:2;s:31:"Methylacidiphilum infernorum V4";i:3;s:15:"Verrucomicrobia";i:4;s:5:"74201";i:5;s:15:"1171211-1171325";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1171573-1172638";i:10;s:1:"+";i:11;s:4:"thrC";i:12;s:18:"Threonine synthase";i:13;s:9:"Minf_1248";i:14;s:6:"Operon";i:15;s:7:"1307952";i:16;s:47:"Minf_1250(napF);Minf_1249(moaD);Minf_1248(thrC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010794.1";i:2;s:31:"Methylacidiphilum infernorum V4";i:3;s:15:"Verrucomicrobia";i:4;s:5:"74201";i:5;s:15:"1993796-1993891";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1994005-1995667";i:10;s:1:"+";i:11;s:4:"tolC";i:12;s:22:"Outer membrane protein";i:13;s:9:"Minf_2150";i:14;s:11:"Single gene";i:15;s:7:"2332815";i:16;s:15:"Minf_2150(tolC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010794.1";i:2;s:31:"Methylacidiphilum infernorum V4";i:3;s:15:"Verrucomicrobia";i:4;s:5:"74201";i:5;s:15:"1995740-1995815";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1996115-1997456";i:10;s:1:"+";i:11;s:4:"proP";i:12;s:66:"Inner membrane component of tripartite multidrug resistance system";i:13;s:9:"Minf_2152";i:14;s:6:"Operon";i:15;s:7:"1308146";i:16;s:25:"Minf_2153;Minf_2152(proP)";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}}
