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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
227888-227994
(-)
TPP
226925-227801 (-)
BAbS19_I02060
Phosphomethylpyrimidine kinase
BAbS19_I02060
Operon
DOOR ID:
442154
BAbS19_I01990,
BAbS19_I02000,
BAbS19_I02010,
BAbS19_I02020
(thiE)
,
BAbS19_I02030
(thiG)
,
BAbS19_I02040,
BAbS19_I02050,
BAbS19_I02060
View Structure
2
338359-338438
(-)
sam-alpha
337071-338268 (-)
BAbS19_I03050
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
BAbS19_I03050
Single gene
DOOR ID:
2330208
BAbS19_I03050
View Structure
3
1286976-1287213
(-)
cobalamin
1286736-1286925 (-)
BAbS19_I12430
BAbS19_I12430
Single gene
DOOR ID:
2330645
BAbS19_I12430
View Structure
4
1325364-1325592
(-)
cobalamin
1323344-1325207 (-)
BAbS19_I12770
TonB-dependent receptor protein
BAbS19_I12770
Operon
DOOR ID:
442342
BAbS19_I12740,
BAbS19_I12750,
BAbS19_I12760,
BAbS19_I12770
View Structure
5
1697392-1697438
(+)
glutamine
1697601-1699038 (-)
BAbS19_I16460
Pyruvate kinase (0)
BAbS19_I16460
Operon
DOOR ID:
442406
BAbS19_I16460,
BAbS19_I16470
View Structure
6
1704214-1704384
(+)
TPP
1704425-1705430 (+)
tbpA
ThiB; thiamine-binding periplasmic binding protein
BAbS19_I16530
Operon
DOOR ID:
442407
BAbS19_I16530
(tbpA)
,
BAbS19_I16540
(thiP)
,
BAbS19_I16550
View Structure
Genome:
Brucella abortus S19 chromosome I
(
NC_010742.1
);
Phylum:
Alphaproteobacteria
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010742.1";i:2;s:33:"Brucella abortus S19 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"227888-227994";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"226925-227801";i:10;s:1:"-";i:11;s:13:"BAbS19_I02060";i:12;s:30:"Phosphomethylpyrimidine kinase";i:13;s:13:"BAbS19_I02060";i:14;s:6:"Operon";i:15;s:6:"442154";i:16;s:123:"BAbS19_I01990;BAbS19_I02000;BAbS19_I02010;BAbS19_I02020(thiE);BAbS19_I02030(thiG);BAbS19_I02040;BAbS19_I02050;BAbS19_I02060";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010742.1";i:2;s:33:"Brucella abortus S19 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"338359-338438";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"337071-338268";i:10;s:1:"-";i:11;s:13:"BAbS19_I03050";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:13:"BAbS19_I03050";i:14;s:11:"Single gene";i:15;s:7:"2330208";i:16;s:13:"BAbS19_I03050";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010742.1";i:2;s:33:"Brucella abortus S19 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1286976-1287213";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1286736-1286925";i:10;s:1:"-";i:11;s:13:"BAbS19_I12430";i:12;s:0:"";i:13;s:13:"BAbS19_I12430";i:14;s:11:"Single gene";i:15;s:7:"2330645";i:16;s:13:"BAbS19_I12430";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010742.1";i:2;s:33:"Brucella abortus S19 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1325364-1325592";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1323344-1325207";i:10;s:1:"-";i:11;s:13:"BAbS19_I12770";i:12;s:31:"TonB-dependent receptor protein";i:13;s:13:"BAbS19_I12770";i:14;s:6:"Operon";i:15;s:6:"442342";i:16;s:55:"BAbS19_I12740;BAbS19_I12750;BAbS19_I12760;BAbS19_I12770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010742.1";i:2;s:33:"Brucella abortus S19 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1697392-1697438";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1697601-1699038";i:10;s:1:"-";i:11;s:13:"BAbS19_I16460";i:12;s:19:"Pyruvate kinase (0)";i:13;s:13:"BAbS19_I16460";i:14;s:6:"Operon";i:15;s:6:"442406";i:16;s:27:"BAbS19_I16460;BAbS19_I16470";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010742.1";i:2;s:33:"Brucella abortus S19 chromosome I";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1704214-1704384";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1704425-1705430";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:50:"ThiB; thiamine-binding periplasmic binding protein";i:13;s:13:"BAbS19_I16530";i:14;s:6:"Operon";i:15;s:6:"442407";i:16;s:53:"BAbS19_I16530(tbpA);BAbS19_I16540(thiP);BAbS19_I16550";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}