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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
176385-176495
(-)
TPP
176092-176347 (-)
PGN_0161
Putative thiamine biosynthesis protein ThiS
PGN_0161
Single gene
DOOR ID:
2328330
PGN_0161
View Structure
2
748442-748622
(-)
cobalamin
747119-748295 (-)
PGN_0687
Putative iron compound ABC transporter periplasmic iron compound-binding protein
PGN_0687
Operon
DOOR ID:
440980
PGN_0683,
PGN_0684,
PGN_0685,
PGN_0686,
PGN_0687
View Structure
3
764546-764786
(+)
cobalamin
764982-767256 (+)
PGN_0704
Putative tonB-linked outer membrane receptor
PGN_0704
Operon
DOOR ID:
440984
PGN_0704,
PGN_0705
View Structure
4
796791-796994
(-)
cobalamin
795030-796491 (-)
PGN_0727
4-hydroxybutyryl-CoA dehydratase
PGN_0727
Single gene
DOOR ID:
2328521
PGN_0727
View Structure
5
985514-985726
(-)
cobalamin
983308-984994 (-)
PGN_0889
Potassium uptake protein TrkA
PGN_0889
Single gene
DOOR ID:
2328571
PGN_0889
View Structure
6
1552754-1553013
(-)
cobalamin
1550267-1552664 (-)
PGN_1396
Anaerobic ribonucleoside-triphosphate reductase
PGN_1396
Operon
DOOR ID:
441140
PGN_1395,
PGN_1396
View Structure
7
2060232-2060345
(-)
TPP
2057304-2057886 (-)
PGN_1829
Probable nicotinamide mononucleotide transporter
PGN_1829
Operon
DOOR ID:
441230
PGN_1828,
PGN_1829,
PGN_1830
View Structure
Genome:
Porphyromonas gingivalis ATCC 33277
(
NC_010729.1
);
Phylum:
Bacteroidetes/Chlorobi group
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