Genome: Clostridium botulinum E3 str. Alaska E43 (NC_010723.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 103577-103751 (+)lysine103871-105590 (+)CLH_0087

CLH_0087Single gene

DOOR ID: 2325194		CLH_0087 View Structure
2 126733-126836 (-)TPP125927-126605 (-)CLH_0107

CLH_0107Single gene

DOOR ID: 2324707		CLH_0107 View Structure
3 331791-331950 (+)glmS332069-333896 (+)glmS

CLH_0323Single gene

DOOR ID: 2325198		CLH_0323 (glmS) View Structure
4 343576-343688 (+)SAM343818-345084 (+)CLH_0332

CLH_0332Single gene

DOOR ID: 2325122		CLH_0332 View Structure
5 391832-391929 (+)purine392067-393522 (+)guaB

CLH_0376Operon

DOOR ID: 439290		CLH_0376 (guaB),
CLH_0377 (guaA)		 View Structure
6 502175-502276 (+)SAM502397-503573 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLH_0507Single gene

DOOR ID: 2325607		CLH_0507 (metK) View Structure
7 521523-521640 (+)FMN521912-522503 (+)CLH_0522

CLH_0522Single gene

DOOR ID: 2325466		CLH_0522 View Structure
8 574953-575150 (+)cobalamin575253-576267 (+)CLH_0576

CLH_0576Operon

DOOR ID: 439327		CLH_0576,
CLH_0577,
CLH_0578		 View Structure
9 620614-620800 (+)cobalamin620929-621676 (+)cbiM

CLH_0614Operon

DOOR ID: 439337		CLH_0614 (cbiM),
CLH_0615		 View Structure
10 834905-834987 (+)c-di-GMP-I835499-835901 (+)flgB

CLH_0804operon

DOOR ID: 439370		CLH_0804 (flgB),
CLH_0805 (flgC),
CLH_0806 (fliE),
CLH_0807 (fliF),
CLH_0808 (fliG),
CLH_0809,
CLH_0810 (fliI),
CLH_0811 (fliJ),
CLH_0812,
CLH_0813,
CLH_0814		 View Structure
11 959975-960074 (+)glycine960140-961568 (+)CLH_0925

CLH_0925Single gene

DOOR ID: 2325499		CLH_0925 View Structure
12 1228120-1228221 (+)purine1228304-1229672 (+)CLH_1159

CLH_1159Single gene

DOOR ID: 2325619		CLH_1159 View Structure
13 1319405-1319520 (+)FMN1319785-1320886 (+)ribD

CLH_1246Operon

DOOR ID: 439455		CLH_1246 (ribD),
CLH_1247 (ribE)		 View Structure
14 1342385-1342444 (-)fluoride1340974-1342321 (-)CLH_1266

CLH_1266Single gene

DOOR ID: 2324772		CLH_1266 View Structure
15 1406168-1406267 (+)purine1406335-1408081 (+)ade

Adenine deaminase (Adenase) (Adenine aminase) 		CLH_1323Single gene

DOOR ID: 2324779		CLH_1323 (ade) View Structure
16 1423366-1423475 (+)TPP1423566-1424193 (+)CLH_1336

CLH_1336Operon

DOOR ID: 439466		CLH_1336,
CLH_1337		 View Structure
17 1435636-1435795 (+)ykoK1436166-1438866 (+)mgtA

CLH_1346Single gene

DOOR ID: 2325689		CLH_1346 (mgtA) View Structure
18 1487041-1487142 (+)purine1487339-1488734 (+)CLH_1392

CLH_1392Single gene

DOOR ID: 2325574		CLH_1392 View Structure
19 1526627-1526718 (+)Nico1526844-1529370 (+)CLH_1425

CLH_1425Single gene

DOOR ID: 2324701		CLH_1425 View Structure
20 1571586-1571699 (-)yybP-ykoY1570436-1571396 (-)CLH_1471

CLH_1471Single gene

DOOR ID: 2325017		CLH_1471 View Structure
21 1903727-1903836 (-)TPP1902465-1903668 (-)cytX

CLH_1772Single gene

DOOR ID: 2324420		CLH_1772 (cytX) View Structure
22 1966438-1966578 (-)SAM1964975-1966283 (-)CLH_1836

CLH_1836Single gene

DOOR ID: 2324715		CLH_1836 View Structure
23 2035051-2035146 (-)purine2033163-2034378 (-)tyrS

CLH_1895Operon

DOOR ID: 439546		CLH_1893,
CLH_1894,
CLH_1895 (tyrS)		 View Structure
24 2045225-2045326 (-)purine2043723-2045088 (-)CLH_1900

CLH_1900Operon

DOOR ID: 439547		CLH_1899 (xpt),
CLH_1900		 View Structure
25 2552048-2552146 (-)purine2550523-2551864 (-)CLH_2378

CLH_2378Single gene

DOOR ID: 2325377		CLH_2378 View Structure
26 2736158-2736261 (-)SAM2735195-2736074 (-)metF

CLH_2584Operon

DOOR ID: 439678		CLH_2581,
CLH_2582,
CLH_2583 (luxS),
CLH_2584 (metF)		 View Structure
27 2840651-2841000 (-)cobalamin2839469-2840306 (-)CLH_2685

CLH_2685Single gene

DOOR ID: 2324977		CLH_2685 View Structure
28 2874491-2874589 (-)THF2873885-2874431 (-)CLH_2717

CLH_2717Single gene

DOOR ID: 2325425		CLH_2717 View Structure
29 2937364-2937409 (-)PreQ12935968-2936949 (-)CLH_2769

CLH_2769Single gene

DOOR ID: 2325220		CLH_2769 View Structure
30 3030622-3030733 (-)TPP3030454-3030583 (-)CLH_2858

CLH_2858Single gene

DOOR ID: 2325248		CLH_2858 View Structure
31 3080162-3080253 (-)c-di-GMP-I3079118-3079853 (-)CLH_2899

CLH_2899single gene

DOOR ID: 2324445		CLH_2899 View Structure
32 3270304-3270473 (-)lysine3268798-3270094 (-)lysA

CLH_3039Single gene

DOOR ID: 2324760		CLH_3039 (lysA) View Structure
33 3290475-3290558 (-)c-di-GMP-II3289542-3290301 (-)CLH_3056

CLH_3056Operon

DOOR ID: 439759		CLH_3053,
CLH_3054,
CLH_3055,
CLH_3056		 View Structure
34 3534713-3534880 (-)lysine3533706-3534579 (-)dapA

CLH_3270Single gene

DOOR ID: 2325699		CLH_3270 (dapA) View Structure