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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1028717-1028892
(+)
FMN
1029059-1029662 (+)
ribE
Riboflavin synthase; alpha subunit
PXO_04399
Operon
DOOR ID:
437873
PXO_04399
(ribE)
,
PXO_04398
(ribAB)
View Structure
2
1090443-1090558
(-)
SAH
1088967-1090410 (-)
ahcY
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
PXO_04338
Single gene
DOOR ID:
2321294
PXO_04338
(ahcY)
View Structure
3
1282376-1282490
(-)
glycine
1279321-1282285 (-)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
PXO_04482
Single gene
DOOR ID:
2321374
PXO_04482
(gcvP)
View Structure
4
2555457-2555533
(+)
fluoride
2555619-2556951 (+)
PXO_01048
Cl-channel; voltage gated
PXO_01048
Single gene
DOOR ID:
2321901
PXO_01048
View Structure
5
2767544-2767620
(+)
fluoride
2767706-2769038 (+)
PXO_06118
Cl-channel; voltage gated
PXO_06118
Single gene
DOOR ID:
2321986
PXO_06118
View Structure
6
3212571-3212690
(-)
SAM
3211468-3212491 (-)
PXO_01680
Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)
PXO_01680
Operon
DOOR ID:
438283
PXO_01681
(metB)
,
PXO_01680
View Structure
7
4002668-4002893
(-)
cobalamin
4000673-4002533 (-)
btuB
TonB-dependent outer membrane Receptor
PXO_02166
Single gene
DOOR ID:
2322505
PXO_02166
(btuB)
View Structure
8
4454150-4454247
(-)
TPP
4452180-4454058 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
PXO_02603
Single gene
DOOR ID:
2322725
PXO_02603
(thiC)
View Structure
9
5044956-5045119
(+)
yybP-ykoY
5045906-5049359 (-)
PXO_02752
Two-component system sensor protein
PXO_02752
Single gene
DOOR ID:
2323003
PXO_02752
View Structure
Genome:
Xanthomonas oryzae pv. oryzae PXO99A
(
NC_010717.1
);
Phylum:
Gammaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1282376-1282490";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1279321-1282285";i:10;s:1:"-";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"PXO_04482";i:14;s:11:"Single gene";i:15;s:7:"2321374";i:16;s:15:"PXO_04482(gcvP)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2555457-2555533";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2555619-2556951";i:10;s:1:"+";i:11;s:9:"PXO_01048";i:12;s:25:"Cl-channel; voltage gated";i:13;s:9:"PXO_01048";i:14;s:11:"Single gene";i:15;s:7:"2321901";i:16;s:9:"PXO_01048";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2767544-2767620";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2767706-2769038";i:10;s:1:"+";i:11;s:9:"PXO_06118";i:12;s:25:"Cl-channel; voltage gated";i:13;s:9:"PXO_06118";i:14;s:11:"Single gene";i:15;s:7:"2321986";i:16;s:9:"PXO_06118";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3212571-3212690";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3211468-3212491";i:10;s:1:"-";i:11;s:9:"PXO_01680";i:12;s:78:"Homoserine O-succinyltransferase (HST) (6) (Homoserine transsuccinylase) (HTS)";i:13;s:9:"PXO_01680";i:14;s:6:"Operon";i:15;s:6:"438283";i:16;s:25:"PXO_01681(metB);PXO_01680";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4002668-4002893";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4000673-4002533";i:10;s:1:"-";i:11;s:4:"btuB";i:12;s:38:"TonB-dependent outer membrane Receptor";i:13;s:9:"PXO_02166";i:14;s:11:"Single gene";i:15;s:7:"2322505";i:16;s:15:"PXO_02166(btuB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4454150-4454247";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4452180-4454058";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"PXO_02603";i:14;s:11:"Single gene";i:15;s:7:"2322725";i:16;s:15:"PXO_02603(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010717.1";i:2;s:37:"Xanthomonas oryzae pv. oryzae PXO99A ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5044956-5045119";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"5045906-5049359";i:10;s:1:"-";i:11;s:9:"PXO_02752";i:12;s:35:"Two-component system sensor protein";i:13;s:9:"PXO_02752";i:14;s:11:"Single gene";i:15;s:7:"2323003";i:16;s:9:"PXO_02752";i:17;s:0:"";i:18;s:15:"View Structure ";}}
