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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
202197-202297
(-)
TPP
200171-202106 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ETA_01710
Operon
DOOR ID:
436738
ETA_01700
(thiE)
,
ETA_01710
(thiC)
View Structure
2
497127-497275
(+)
FMN
497382-498039 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ETA_04280
Single gene
DOOR ID:
2318960
ETA_04280
(ribB)
View Structure
3
822487-822582
(-)
TPP
821460-822447 (-)
tbpA
Thiamine-binding periplasmic protein
ETA_07350
Operon
DOOR ID:
436847
ETA_07330
(thiQ)
,
ETA_07340
(thiP)
,
ETA_07350
(tbpA)
View Structure
4
864835-864954
(+)
TPP
865035-866028 (+)
thiO
Putative amino acid oxidase flavoprotein ThiO
ETA_07710
Operon
DOOR ID:
436852
ETA_07710
(thiO)
,
ETA_07720
(thiS)
,
ETA_07730
(thiG)
,
ETA_07740
(thiF)
View Structure
5
1466823-1466921
(+)
TPP
1467065-1467866 (+)
thiD
Phosphomethylpyrimidine kinase
ETA_13040
Single gene
DOOR ID:
2319304
ETA_13040
(thiD)
View Structure
6
2366404-2366441
(+)
SAM-SAH
2366477-2366930 (-)
ycbG
Macrodomain Ter protein
ETA_21040
Single gene
DOOR ID:
2319691
ETA_21040
(ycbG)
View Structure
7
2548079-2548214
(-)
MOCO
2546570-2547086 (-)
moaB
Molybdenum cofactor biosynthesis protein B
ETA_22580
Operon
DOOR ID:
437115
ETA_22540,
ETA_22550
(moaE)
,
ETA_22560
(moaD)
,
ETA_22570
(moaC)
,
ETA_22580
(moaB)
,
ETA_22590
(moaA)
View Structure
8
2891537-2891609
(-)
fluoride
2891078-2891456 (-)
crcB
Putative fluoride ion transporter CrcB
ETA_25880
Single gene
DOOR ID:
2319886
ETA_25880
(crcB)
View Structure
9
3490546-3490735
(+)
lysine
3490828-3492181 (+)
lysC
Aspartokinase
ETA_31120
Single gene
DOOR ID:
2320123
ETA_31120
(lysC)
View Structure
10
3718324-3718371
(-)
mini-ykkC
3717985-3718312 (-)
ETA_33380
ETA_33380
Operon
DOOR ID:
437318
ETA_33370,
ETA_33380
View Structure
Genome:
Erwinia tasmaniensis Et1/99
(
NC_010694.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"497127-497275";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"497382-498039";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"ETA_04280";i:14;s:11:"Single gene";i:15;s:7:"2318960";i:16;s:15:"ETA_04280(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"822487-822582";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"821460-822447";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:9:"ETA_07350";i:14;s:6:"Operon";i:15;s:6:"436847";i:16;s:47:"ETA_07330(thiQ);ETA_07340(thiP);ETA_07350(tbpA)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"864835-864954";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"865035-866028";i:10;s:1:"+";i:11;s:4:"thiO";i:12;s:45:"Putative amino acid oxidase flavoprotein ThiO";i:13;s:9:"ETA_07710";i:14;s:6:"Operon";i:15;s:6:"436852";i:16;s:63:"ETA_07710(thiO);ETA_07720(thiS);ETA_07730(thiG);ETA_07740(thiF)";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1466823-1466921";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1467065-1467866";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:9:"ETA_13040";i:14;s:11:"Single gene";i:15;s:7:"2319304";i:16;s:15:"ETA_13040(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2366404-2366441";i:6;s:1:"+";i:7;s:7:"SAM-SAH";i:8;s:0:"";i:9;s:15:"2366477-2366930";i:10;s:1:"-";i:11;s:4:"ycbG";i:12;s:23:"Macrodomain Ter protein";i:13;s:9:"ETA_21040";i:14;s:11:"Single gene";i:15;s:7:"2319691";i:16;s:15:"ETA_21040(ycbG)";i:17;s:108:"cell cycle [GO:0007049]; cell division [GO:0051301]; regulation of transcription; DNA-templated [GO:0006355]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2548079-2548214";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"2546570-2547086";i:10;s:1:"-";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"ETA_22580";i:14;s:6:"Operon";i:15;s:6:"437115";i:16;s:89:"ETA_22540;ETA_22550(moaE);ETA_22560(moaD);ETA_22570(moaC);ETA_22580(moaB);ETA_22590(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2891537-2891609";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2891078-2891456";i:10;s:1:"-";i:11;s:4:"crcB";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:9:"ETA_25880";i:14;s:11:"Single gene";i:15;s:7:"2319886";i:16;s:15:"ETA_25880(crcB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3490546-3490735";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3490828-3492181";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"ETA_31120";i:14;s:11:"Single gene";i:15;s:7:"2320123";i:16;s:15:"ETA_31120(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010694.1";i:2;s:28:"Erwinia tasmaniensis Et1/99 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3718324-3718371";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3717985-3718312";i:10;s:1:"-";i:11;s:9:"ETA_33380";i:12;s:0:"";i:13;s:9:"ETA_33380";i:14;s:6:"Operon";i:15;s:6:"437318";i:16;s:19:"ETA_33370;ETA_33380";i:17;s:0:"";i:18;s:15:"View Structure ";}}
