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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1007147-1007245
(+)
TPP
1007359-1009237 (+)
thiC
xccb100_0879
Single gene
DOOR ID:
2317352
xccb100_0879
(thiC)
View Structure
2
1293195-1293418
(+)
cobalamin
1293530-1295411 (+)
xccb100_1127
TonB-dependent outer membrane receptor
xccb100_1127
Single gene
DOOR ID:
2317460
xccb100_1127
View Structure
3
2646665-2646740
(-)
fluoride
2645256-2646639 (-)
clcA2
Chloride channel
xccb100_2276
Single gene
DOOR ID:
2317872
xccb100_2276
(clcA2)
View Structure
4
3679660-3679774
(+)
glycine
3679864-3682801 (+)
xccb100_3229
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
xccb100_3229
Single gene
DOOR ID:
2318263
xccb100_3229
View Structure
5
4144404-4144572
(-)
FMN
4143632-4144235 (-)
xccb100_3660
Riboflavin synthase; alpha chain
xccb100_3660
Operon
DOOR ID:
436528
xccb100_3656,
xccb100_3657
(nusB)
,
xccb100_3658
(ribH)
,
xccb100_3659,
xccb100_3660
View Structure
6
4838054-4838226
(+)
yybP-ykoY
4838230-4838812 (+)
xccb100_4276
xccb100_4276
Single gene
DOOR ID:
2318671
xccb100_4276
View Structure
Genome:
Xanthomonas campestris pv. campestris str. B100
(
NC_010688.1
);
Phylum:
Gammaproteobacteria
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