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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
718329-718457
(-)
ZMP-ZTP
716947-718195 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Rpic_0678
Single gene
DOOR ID:
2315842
Rpic_0678
(glyA)
View Structure
2
1749428-1749579
(-)
yybP-ykoY
1748359-1749370 (-)
Rpic_1664
Sodium/calcium exchanger membrane region
Rpic_1664
Single gene
DOOR ID:
2316142
Rpic_1664
View Structure
3
2363352-2363492
(+)
yybP-ykoY
2363575-2364148 (+)
Rpic_2251
Rpic_2251
Single gene
DOOR ID:
2316369
Rpic_2251
View Structure
4
2782025-2782273
(-)
cobalamin
2780001-2781885 (-)
Rpic_2667
TonB-dependent receptor
Rpic_2667
Operon
DOOR ID:
435561
Rpic_2661,
Rpic_2662
(cobS)
,
Rpic_2663
(cobT)
,
Rpic_2664,
Rpic_2665,
Rpic_2666,
Rpic_2667
View Structure
5
3072575-3072726
(+)
yybP-ykoY
3072783-3073794 (+)
Rpic_2952
Sodium/calcium exchanger membrane region
Rpic_2952
Single gene
DOOR ID:
2316601
Rpic_2952
View Structure
6
3648231-3648328
(+)
glycine
3648597-3649725 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Rpic_3487
Operon
DOOR ID:
435718
Rpic_3487
(gcvT)
,
Rpic_3488,
Rpic_3489
View Structure
7
3648341-3648468
(+)
glycine
3648597-3649725 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Rpic_3487
Operon
DOOR ID:
435718
Rpic_3487
(gcvT)
,
Rpic_3488,
Rpic_3489
View Structure
8
3812444-3812545
(+)
TPP
3812644-3814552 (+)
Rpic_3642
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Rpic_3642
Operon
DOOR ID:
435745
Rpic_3642,
Rpic_3643,
Rpic_3644,
Rpic_3645
(thiG)
,
Rpic_3646
View Structure
9
3828986-3829069
(+)
SAH
3829177-3830602 (+)
Rpic_3656
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Rpic_3656
Operon
DOOR ID:
435748
Rpic_3656,
Rpic_3657,
Rpic_3658,
Rpic_3659
View Structure
Genome:
Ralstonia pickettii 12J chromosome I
(
NC_010682.1
);
Phylum:
Betaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010682.1";i:2;s:36:"Ralstonia pickettii 12J chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3828986-3829069";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3829177-3830602";i:10;s:1:"+";i:11;s:9:"Rpic_3656";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:9:"Rpic_3656";i:14;s:6:"Operon";i:15;s:6:"435748";i:16;s:39:"Rpic_3656;Rpic_3657;Rpic_3658;Rpic_3659";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
