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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1029559-1029757
(-)
cobalamin
1027306-1029403 (-)
Amuc_0862
Anaerobic ribonucleoside-triphosphate reductase
Amuc_0862
Single gene
DOOR ID:
2307599
Amuc_0862
View Structure
2
2043664-2043810
(+)
cobalamin
2043844-2045851 (+)
Amuc_1684
TonB-dependent receptor
Amuc_1684
Single gene
DOOR ID:
2307970
Amuc_1684
View Structure
3
2236030-2236149
(+)
TPP
2236214-2238038 (+)
Amuc_1840
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Amuc_1840
Single gene
DOOR ID:
2308039
Amuc_1840
View Structure
4
2560288-2560429
(+)
cobalamin
2560567-2561392 (+)
Amuc_2105
Amuc_2105
Single gene
DOOR ID:
2308149
Amuc_2105
View Structure
Genome:
Akkermansia muciniphila ATCC BAA-835
(
NC_010655.1
);
Phylum:
Verrucomicrobia
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