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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
260844-260947
(-)
TPP
258877-260791 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BAV0251
Single gene
DOOR ID:
2306137
BAV0251
(thiC)
View Structure
2
500304-500395
(+)
glycine
500602-501703 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BAV0491
Single gene
DOOR ID:
2306219
BAV0491
(gcvT)
View Structure
3
500420-500531
(+)
glycine
500602-501703 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
BAV0491
Single gene
DOOR ID:
2306219
BAV0491
(gcvT)
View Structure
4
579116-579161
(-)
mini-ykkC
577651-578815 (-)
BAV0554
BAV0554
Single gene
DOOR ID:
2306237
BAV0554
View Structure
5
673970-674061
(-)
TPP
672826-673933 (-)
BAV0647
Acyl-protein synthetase
BAV0647
Single gene
DOOR ID:
2306259
BAV0647
View Structure
6
2998771-2998913
(-)
yybP-ykoY
2997701-2998739 (-)
BAV2771
Putative Ca2+/Na+ antiporter
BAV2771
Single gene
DOOR ID:
2306993
BAV2771
View Structure
7
3463652-3463732
(-)
sam-alpha
3461805-3462417 (-)
metW
Putative methionine biosynthesis protein
BAV3186
Operon
DOOR ID:
430884
BAV3186
(metW)
,
BAV3187
(metX)
View Structure
8
3684106-3684252
(+)
FMN
3684350-3685037 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BAV3391
Single gene
DOOR ID:
2307216
BAV3391
(ribB)
View Structure
Genome:
Bordetella avium 197N
(
NC_010645.1
);
Phylum:
Betaproteobacteria
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