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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
141906-142168
(+)
cobalamin
142236-144129 (+)
btuB
YPTS_0132
Operon
DOOR ID:
429156
YPTS_0132
(btuB)
,
YPTS_0133
View Structure
2
344937-345062
(-)
TPP
342758-344804 (-)
YPTS_0311
YPTS_0311
Operon
DOOR ID:
429194
YPTS_0306
(thiH)
,
YPTS_0307
(thiG)
,
YPTS_0308,
YPTS_0309,
YPTS_0310,
YPTS_0311
View Structure
3
482301-482347
(+)
mini-ykkC
482845-483202 (-)
YPTS_0436
YPTS_0436
Operon
DOOR ID:
429222
YPTS_0436,
YPTS_0437,
YPTS_0438,
YPTS_0439
View Structure
4
775321-775458
(-)
TPP
772670-774278 (-)
thiP
YPTS_0686
Operon
DOOR ID:
429265
YPTS_0685
(thiQ)
,
YPTS_0686
(thiP)
,
YPTS_0687
(tbpA)
View Structure
5
1289611-1289674
(-)
fluoride
1289126-1289510 (-)
YPTS_1145
YPTS_1145
Single gene
DOOR ID:
2304239
YPTS_1145
View Structure
6
1416468-1416614
(+)
MOCO
1417803-1418283 (+)
moaC
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
YPTS_1271
Operon
DOOR ID:
429379
YPTS_1271
(moaC)
,
YPTS_1272
(moaD)
,
YPTS_1273
(moaE)
View Structure
7
1981829-1982028
(-)
yybP-ykoY
1981248-1981818 (-)
YPTS_1753
Putative manganese efflux pump MntP
YPTS_1753
Single gene
DOOR ID:
2304518
YPTS_1753
View Structure
8
3258099-3258203
(-)
TPP
3257971-3258064 (-)
YPTS_2931
YPTS_2931
Operon
DOOR ID:
429685
YPTS_2930,
YPTS_2931
View Structure
9
3954663-3954852
(-)
FMN
3953766-3954420 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
YPTS_3546
Single gene
DOOR ID:
2305297
YPTS_3546
(ribB)
View Structure
Genome:
Yersinia pseudotuberculosis PB1/+
(
NC_010634.1
);
Phylum:
Gammaproteobacteria
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