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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
38911-39092
(+)
cobalamin
39177-40575 (+)
Bphy_3143
Precorrin-3B synthase
Bphy_3143
Operon
DOOR ID:
427402
Bphy_3143,
Bphy_3144
(cobH)
,
Bphy_3145,
Bphy_3146
View Structure
2
61941-62220
(-)
cobalamin
60645-61755 (-)
Bphy_3153
Cobalamin biosynthesis protein CobW
Bphy_3153
Operon
DOOR ID:
427404
Bphy_3150,
Bphy_3151,
Bphy_3152
(cobN)
,
Bphy_3153
View Structure
3
62330-62588
(+)
cobalamin
62774-63518 (+)
Bphy_3154
Uroporphyrin-III C-methyltransferase
Bphy_3154
Operon
DOOR ID:
427405
Bphy_3154,
Bphy_3155,
Bphy_3156,
Bphy_3157,
Bphy_3158
View Structure
4
361625-361714
(-)
cobalamin
361335-361560 (-)
Bphy_3437
Bphy_3437
Operon
DOOR ID:
427447
Bphy_3436,
Bphy_3437
View Structure
5
948706-948826
(+)
ykkC-yxkD
948832-949951 (+)
Bphy_3974
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
Bphy_3974
Operon
DOOR ID:
427547
Bphy_3974,
Bphy_3975,
Bphy_3976,
Bphy_3977,
Bphy_3978
View Structure
6
953099-953146
(+)
mini-ykkC
953167-956779 (+)
Bphy_3979
Bphy_3979
Operon
DOOR ID:
427548
Bphy_3979,
Bphy_3980
View Structure
7
1915858-1916028
(-)
glycine
1913456-1914953 (+)
Bphy_4848
AMP-dependent synthetase and ligase
Bphy_4848
Operon
DOOR ID:
427707
Bphy_4847,
Bphy_4848
View Structure
8
2399273-2399393
(-)
ZMP-ZTP
2398600-2399233 (-)
Bphy_5273
Lysine exporter protein (LYSE/YGGA)
Bphy_5273
Single gene
DOOR ID:
2298270
Bphy_5273
View Structure
Genome:
Burkholderia phymatum STM815 chromosome II
(
NC_010623.1
);
Phylum:
Betaproteobacteria
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