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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
185953-186081
(-)
TPP
185142-185907 (-)
fabG
Putative oxidoreductase
KRH_01670
Operon
DOOR ID:
426318
KRH_01660,
KRH_01670
(fabG)
View Structure
2
258333-258419
(-)
SAM
257106-258318 (-)
KRH_02320
KRH_02320
Single gene
DOOR ID:
2295202
KRH_02320
View Structure
3
426840-426946
(+)
TPP
427004-427628 (+)
KRH_03880
Hypothetical membrane protein
KRH_03880
Operon
DOOR ID:
426363
KRH_03880,
KRH_03890,
KRH_03900
View Structure
4
482641-482761
(-)
TPP
481018-481285 (-)
thiS
Putative thiamine biosynthesis protein ThiS
KRH_04410
Operon
DOOR ID:
426374
KRH_04390
(moeB)
,
KRH_04400
(thiG)
,
KRH_04410
(thiS)
View Structure
5
650976-651093
(+)
glycine
651253-654148 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
KRH_05980
Operon
DOOR ID:
426412
KRH_05980
(gcvP)
,
KRH_05990
(gcvT)
View Structure
6
651094-651205
(+)
glycine
651253-654148 (+)
gcvP
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
KRH_05980
Operon
DOOR ID:
426412
KRH_05980
(gcvP)
,
KRH_05990
(gcvT)
View Structure
7
1246133-1246226
(+)
TPP
1248010-1248322 (+)
rplU
50S ribosomal protein L21
KRH_11300
Operon
DOOR ID:
426535
KRH_11300
(rplU)
,
KRH_11310
(rpmA)
View Structure
8
1291029-1291204
(+)
FMN
1291333-1292056 (+)
KRH_11680
Putative PnuC family transporter
KRH_11680
Single gene
DOOR ID:
2295517
KRH_11680
View Structure
9
1833107-1833221
(-)
SAM-IV
1832129-1833014 (-)
KRH_16150
Putative ABC transporter substrate-binding protein
KRH_16150
Operon
DOOR ID:
426641
KRH_16130,
KRH_16140,
KRH_16150
View Structure
10
1881654-1881772
(-)
SAM-IV
1880043-1881579 (-)
metY
O-acetylhomoserine (Thiol)-lyase (9)
KRH_16600
Operon
DOOR ID:
426652
KRH_16590
(metX)
,
KRH_16600
(metY)
View Structure
11
2079470-2079669
(-)
ydaO-yuaA
2078858-2079455 (-)
KRH_18260
KRH_18260
Single gene
DOOR ID:
2295775
KRH_18260
View Structure
12
2396342-2396458
(+)
SAM-IV
2396502-2397498 (+)
metF
Methylenetetrahydrofolate reductase (0)
KRH_20900
Single gene
DOOR ID:
2295883
KRH_20900
(metF)
View Structure
Genome:
Kocuria rhizophila DC2201
(
NC_010617.1
);
Phylum:
Actinobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"185953-186081";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"185142-185907";i:10;s:1:"-";i:11;s:4:"fabG";i:12;s:23:"Putative oxidoreductase";i:13;s:9:"KRH_01670";i:14;s:6:"Operon";i:15;s:6:"426318";i:16;s:25:"KRH_01660;KRH_01670(fabG)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"258333-258419";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"257106-258318";i:10;s:1:"-";i:11;s:9:"KRH_02320";i:12;s:0:"";i:13;s:9:"KRH_02320";i:14;s:11:"Single gene";i:15;s:7:"2295202";i:16;s:9:"KRH_02320";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"426840-426946";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"427004-427628";i:10;s:1:"+";i:11;s:9:"KRH_03880";i:12;s:29:"Hypothetical membrane protein";i:13;s:9:"KRH_03880";i:14;s:6:"Operon";i:15;s:6:"426363";i:16;s:29:"KRH_03880;KRH_03890;KRH_03900";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"482641-482761";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"481018-481285";i:10;s:1:"-";i:11;s:4:"thiS";i:12;s:43:"Putative thiamine biosynthesis protein ThiS";i:13;s:9:"KRH_04410";i:14;s:6:"Operon";i:15;s:6:"426374";i:16;s:47:"KRH_04390(moeB);KRH_04400(thiG);KRH_04410(thiS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"650976-651093";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"651253-654148";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"KRH_05980";i:14;s:6:"Operon";i:15;s:6:"426412";i:16;s:31:"KRH_05980(gcvP);KRH_05990(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"651094-651205";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"651253-654148";i:10;s:1:"+";i:11;s:4:"gcvP";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"KRH_05980";i:14;s:6:"Operon";i:15;s:6:"426412";i:16;s:31:"KRH_05980(gcvP);KRH_05990(gcvT)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1246133-1246226";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1248010-1248322";i:10;s:1:"+";i:11;s:4:"rplU";i:12;s:25:"50S ribosomal protein L21";i:13;s:9:"KRH_11300";i:14;s:6:"Operon";i:15;s:6:"426535";i:16;s:31:"KRH_11300(rplU);KRH_11310(rpmA)";i:17;s:24:"translation [GO:0006412]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1291029-1291204";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1291333-1292056";i:10;s:1:"+";i:11;s:9:"KRH_11680";i:12;s:32:"Putative PnuC family transporter";i:13;s:9:"KRH_11680";i:14;s:11:"Single gene";i:15;s:7:"2295517";i:16;s:9:"KRH_11680";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1833107-1833221";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1832129-1833014";i:10;s:1:"-";i:11;s:9:"KRH_16150";i:12;s:50:"Putative ABC transporter substrate-binding protein";i:13;s:9:"KRH_16150";i:14;s:6:"Operon";i:15;s:6:"426641";i:16;s:29:"KRH_16130;KRH_16140;KRH_16150";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1881654-1881772";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"1880043-1881579";i:10;s:1:"-";i:11;s:4:"metY";i:12;s:36:"O-acetylhomoserine (Thiol)-lyase (9)";i:13;s:9:"KRH_16600";i:14;s:6:"Operon";i:15;s:6:"426652";i:16;s:31:"KRH_16590(metX);KRH_16600(metY)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2079470-2079669";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2078858-2079455";i:10;s:1:"-";i:11;s:9:"KRH_18260";i:12;s:0:"";i:13;s:9:"KRH_18260";i:14;s:11:"Single gene";i:15;s:7:"2295775";i:16;s:9:"KRH_18260";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010617.1";i:2;s:25:"Kocuria rhizophila DC2201";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2396342-2396458";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2396502-2397498";i:10;s:1:"+";i:11;s:4:"metF";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:9:"KRH_20900";i:14;s:11:"Single gene";i:15;s:7:"2295883";i:16;s:15:"KRH_20900(metF)";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}}
