About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
299462-299596
(-)
TPP
297494-299372 (-)
ACICU_00274
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ACICU_00274
Operon
DOOR ID:
424575
ACICU_00272,
ACICU_00273,
ACICU_00274
View Structure
2
439864-439930
(+)
fluoride
440054-440435 (+)
ACICU_00398
Putative fluoride ion transporter CrcB
ACICU_00398
Single gene
DOOR ID:
2291341
ACICU_00398
View Structure
3
873853-874003
(-)
FMN
873102-873762 (-)
ACICU_00781
ACICU_00781
Single gene
DOOR ID:
2291513
ACICU_00781
View Structure
4
1383150-1383245
(+)
ykkC-yxkD
1383273-1384014 (+)
ACICU_01281
ACICU_01281
Operon
DOOR ID:
424756
ACICU_01281,
ACICU_01282,
ACICU_01283
View Structure
5
2245013-2245100
(-)
glycine
2243590-2244835 (-)
ACICU_02107
ACICU_02107
Single gene
DOOR ID:
2292108
ACICU_02107
View Structure
6
2676542-2676645
(+)
SAH
2676680-2678063 (+)
ACICU_02536
ACICU_02536
Operon
DOOR ID:
424979
ACICU_02536,
ACICU_02537,
ACICU_02538
View Structure
7
3322749-3322956
(+)
cobalamin
3322979-3324863 (+)
ACICU_03124
ACICU_03124
Single gene
DOOR ID:
2292561
ACICU_03124
View Structure
8
3738065-3738261
(-)
yybP-ykoY
3737473-3738049 (-)
ACICU_03522
ACICU_03522
Single gene
DOOR ID:
2292757
ACICU_03522
View Structure
Genome:
Acinetobacter baumannii ACICU
(
NC_010611.1
);
Phylum:
Gammaproteobacteria
a:9:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"299462-299596";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"297494-299372";i:10;s:1:"-";i:11;s:11:"ACICU_00274";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"ACICU_00274";i:14;s:6:"Operon";i:15;s:6:"424575";i:16;s:35:"ACICU_00272;ACICU_00273;ACICU_00274";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"439864-439930";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"440054-440435";i:10;s:1:"+";i:11;s:11:"ACICU_00398";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:11:"ACICU_00398";i:14;s:11:"Single gene";i:15;s:7:"2291341";i:16;s:11:"ACICU_00398";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"873853-874003";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"873102-873762";i:10;s:1:"-";i:11;s:11:"ACICU_00781";i:12;s:0:"";i:13;s:11:"ACICU_00781";i:14;s:11:"Single gene";i:15;s:7:"2291513";i:16;s:11:"ACICU_00781";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1383150-1383245";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1383273-1384014";i:10;s:1:"+";i:11;s:11:"ACICU_01281";i:12;s:0:"";i:13;s:11:"ACICU_01281";i:14;s:6:"Operon";i:15;s:6:"424756";i:16;s:35:"ACICU_01281;ACICU_01282;ACICU_01283";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2245013-2245100";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2243590-2244835";i:10;s:1:"-";i:11;s:11:"ACICU_02107";i:12;s:0:"";i:13;s:11:"ACICU_02107";i:14;s:11:"Single gene";i:15;s:7:"2292108";i:16;s:11:"ACICU_02107";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2676542-2676645";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2676680-2678063";i:10;s:1:"+";i:11;s:11:"ACICU_02536";i:12;s:0:"";i:13;s:11:"ACICU_02536";i:14;s:6:"Operon";i:15;s:6:"424979";i:16;s:35:"ACICU_02536;ACICU_02537;ACICU_02538";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3322749-3322956";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3322979-3324863";i:10;s:1:"+";i:11;s:11:"ACICU_03124";i:12;s:0:"";i:13;s:11:"ACICU_03124";i:14;s:11:"Single gene";i:15;s:7:"2292561";i:16;s:11:"ACICU_03124";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010611.1";i:2;s:30:"Acinetobacter baumannii ACICU ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3738065-3738261";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"3737473-3738049";i:10;s:1:"-";i:11;s:11:"ACICU_03522";i:12;s:0:"";i:13;s:11:"ACICU_03522";i:14;s:11:"Single gene";i:15;s:7:"2292757";i:16;s:11:"ACICU_03522";i:17;s:0:"";i:18;s:15:"View Structure ";}}