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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
180358-180446
(+)
TPP
181933-183457 (-)
LAF_0149
LAF_0149
Single gene
DOOR ID:
2290525
LAF_0149
View Structure
2
911460-911594
(-)
FMN
910239-911298 (-)
LAF_0776
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
LAF_0776
Operon
DOOR ID:
424295
LAF_0773
(ribH)
,
LAF_0774,
LAF_0775,
LAF_0776
View Structure
3
948228-948328
(-)
TPP
947282-948047 (-)
LAF_0803
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
LAF_0803
Operon
DOOR ID:
424301
LAF_0802,
LAF_0803
View Structure
4
1003271-1003451
(+)
lysine
1003541-1004861 (+)
LAF_0854
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LAF_0854
Operon
DOOR ID:
424315
LAF_0854,
LAF_0855,
LAF_0856,
LAF_0857,
LAF_0858,
LAF_0859,
LAF_0860
View Structure
5
1025321-1025440
(+)
FMN
1025536-1026115 (+)
LAF_0875
Riboflavin transporter
LAF_0875
Single gene
DOOR ID:
2290785
LAF_0875
View Structure
6
1538564-1538660
(-)
SMK_box
1536304-1537102 (-)
LAF_1357
Glutamate 5-kinase (1) (Gamma-glutamyl kinase) (GK)
LAF_1357
Operon
DOOR ID:
424421
LAF_1356
(proA)
,
LAF_1357
View Structure
7
1731625-1731717
(-)
TPP
1731082-1731418 (-)
LAF_1533
LAF_1533
Operon
DOOR ID:
424459
LAF_1532,
LAF_1533
View Structure
8
1736664-1736834
(-)
lysine
1735083-1736574 (-)
LAF_1536
Lysine transport protein
LAF_1536
Single gene
DOOR ID:
2291029
LAF_1536
View Structure
9
1926072-1926171
(+)
purine
1926218-1927550 (+)
LAF_1694
Xanthine-uracil transport protein
LAF_1694
Single gene
DOOR ID:
2291109
LAF_1694
View Structure
10
1938662-1938751
(+)
TPP
1938830-1939400 (+)
LAF_1705
LAF_1705
Operon
DOOR ID:
424492
LAF_1705,
LAF_1706,
LAF_1707,
LAF_1708
View Structure
Genome:
Lactobacillus fermentum IFO 3956
(
NC_010610.1
);
Phylum:
Firmicutes
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1003271-1003451";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1003541-1004861";i:10;s:1:"+";i:11;s:8:"LAF_0854";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:8:"LAF_0854";i:14;s:6:"Operon";i:15;s:6:"424315";i:16;s:62:"LAF_0854;LAF_0855;LAF_0856;LAF_0857;LAF_0858;LAF_0859;LAF_0860";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1025321-1025440";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1025536-1026115";i:10;s:1:"+";i:11;s:8:"LAF_0875";i:12;s:22:"Riboflavin transporter";i:13;s:8:"LAF_0875";i:14;s:11:"Single gene";i:15;s:7:"2290785";i:16;s:8:"LAF_0875";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1538564-1538660";i:6;s:1:"-";i:7;s:7:"SMK_box";i:8;s:0:"";i:9;s:15:"1536304-1537102";i:10;s:1:"-";i:11;s:8:"LAF_1357";i:12;s:51:"Glutamate 5-kinase (1) (Gamma-glutamyl kinase) (GK)";i:13;s:8:"LAF_1357";i:14;s:6:"Operon";i:15;s:6:"424421";i:16;s:23:"LAF_1356(proA);LAF_1357";i:17;s:43:"L-proline biosynthetic process [GO:0055129]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1731625-1731717";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1731082-1731418";i:10;s:1:"-";i:11;s:8:"LAF_1533";i:12;s:0:"";i:13;s:8:"LAF_1533";i:14;s:6:"Operon";i:15;s:6:"424459";i:16;s:17:"LAF_1532;LAF_1533";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1736664-1736834";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1735083-1736574";i:10;s:1:"-";i:11;s:8:"LAF_1536";i:12;s:24:"Lysine transport protein";i:13;s:8:"LAF_1536";i:14;s:11:"Single gene";i:15;s:7:"2291029";i:16;s:8:"LAF_1536";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1926072-1926171";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1926218-1927550";i:10;s:1:"+";i:11;s:8:"LAF_1694";i:12;s:33:"Xanthine-uracil transport protein";i:13;s:8:"LAF_1694";i:14;s:11:"Single gene";i:15;s:7:"2291109";i:16;s:8:"LAF_1694";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010610.1";i:2;s:32:"Lactobacillus fermentum IFO 3956";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1938662-1938751";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1938830-1939400";i:10;s:1:"+";i:11;s:8:"LAF_1705";i:12;s:0:"";i:13;s:8:"LAF_1705";i:14;s:6:"Operon";i:15;s:6:"424492";i:16;s:35:"LAF_1705;LAF_1706;LAF_1707;LAF_1708";i:17;s:0:"";i:18;s:15:"View Structure ";}}
