About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
1124640-1124738
(-)
TPP
1122757-1124614 (-)
XfasM23_0958
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
XfasM23_0958
Single gene
DOOR ID:
2285663
XfasM23_0958
View Structure
2
1532495-1532620
(+)
yybP-ykoY
1532669-1533254 (+)
XfasM23_1382
Putative manganese efflux pump MntP
XfasM23_1382
Single gene
DOOR ID:
2285800
XfasM23_1382
View Structure
Genome:
Xylella fastidiosa M23
(
NC_010577.1
);
Phylum:
Gammaproteobacteria
a:3:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010577.1";i:2;s:23:"Xylella fastidiosa M23 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1124640-1124738";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1122757-1124614";i:10;s:1:"-";i:11;s:12:"XfasM23_0958";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"XfasM23_0958";i:14;s:11:"Single gene";i:15;s:7:"2285663";i:16;s:12:"XfasM23_0958";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010577.1";i:2;s:23:"Xylella fastidiosa M23 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1532495-1532620";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1532669-1533254";i:10;s:1:"+";i:11;s:12:"XfasM23_1382";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:12:"XfasM23_1382";i:14;s:11:"Single gene";i:15;s:7:"2285800";i:16;s:12:"XfasM23_1382";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
