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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
290025-290151
(-)
cobalamin
288813-289923 (-)
SGR_272
Putative FecCD-family membrane transport protein
SGR_272
Operon
DOOR ID:
420087
SGR_270,
SGR_271,
SGR_272
View Structure
2
559858-560045
(-)
ydaO-yuaA
559009-559852 (-)
SGR_478
SGR_478
Single gene
DOOR ID:
2281955
SGR_478
View Structure
3
780795-780887
(-)
AdoCbl
780533-780749 (-)
SGR_663
SGR_663
Operon
DOOR ID:
420161
SGR_662,
SGR_663
View Structure
4
1131616-1131776
(-)
ydaO-yuaA
1130659-1131613 (-)
SGR_955
Putative M23-family secreted peptidase
SGR_955
Single gene
DOOR ID:
2282180
SGR_955
View Structure
5
1414970-1415063
(+)
yybP-ykoY
1415202-1415787 (+)
SGR_1199
SGR_1199
Single gene
DOOR ID:
2282297
SGR_1199
View Structure
6
1431231-1431376
(-)
cobalamin
1428717-1431042 (-)
SGR_1212
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
SGR_1212
Single gene
DOOR ID:
2282302
SGR_1212
View Structure
7
1433077-1433256
(+)
cobalamin
1433483-1434986 (+)
SGR_1215
Putative NAD-dependent aldehyde dehydrogenase
SGR_1215
Operon
DOOR ID:
420250
SGR_1215,
SGR_1216,
SGR_1217,
SGR_1218,
SGR_1219
View Structure
8
1942190-1942266
(-)
cobalamin
1940639-1942052 (-)
SGR_1647
SGR_1647
Single gene
DOOR ID:
2282481
SGR_1647
View Structure
9
1942429-1942499
(+)
cobalamin
1942631-1945427 (+)
SGR_1648
SGR_1648
Operon
DOOR ID:
420344
SGR_1648,
SGR_1649,
SGR_1650,
SGR_1651,
SGR_1652,
SGR_1653
View Structure
10
1950681-1950825
(+)
cobalamin
1950936-1952265 (-)
SGR_1654
Putative RNA methyltransferase
SGR_1654
Single gene
DOOR ID:
2282482
SGR_1654
View Structure
11
1986228-1986394
(-)
ydaO-yuaA
1985398-1986214 (-)
SGR_1686
Putative M23-family secreted peptidase
SGR_1686
Single gene
DOOR ID:
2282493
SGR_1686
View Structure
12
2208394-2208510
(-)
TPP
2207214-2208390 (-)
SGR_1857
Putative ABC transporter substrate-binding protein
SGR_1857
Operon
DOOR ID:
420389
SGR_1855,
SGR_1856,
SGR_1857
View Structure
13
2416132-2416229
(+)
glycine
2416403-2417519 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
SGR_2045
Operon
DOOR ID:
420426
SGR_2045
(gcvT)
,
SGR_2046,
SGR_2047
(glyA)
View Structure
14
2717330-2717471
(+)
cobalamin
2717606-2720021 (+)
SGR_2299
Ribonucleoside-diphosphate reductase
SGR_2299
Operon
DOOR ID:
420478
SGR_2299,
SGR_2300
View Structure
15
3235829-3235995
(+)
ydaO-yuaA
3237233-3237587 (-)
SGR_2735
Putative integral membrane protein
SGR_2735
Single gene
DOOR ID:
2283006
SGR_2735
View Structure
16
3750231-3750358
(-)
SAM
3748909-3750211 (-)
SGR_3228
Putative threonine synthase
SGR_3228
Operon
DOOR ID:
420640
SGR_3227,
SGR_3228
View Structure
17
4274187-4274320
(-)
TPP
4270925-4272314 (-)
SGR_3652
SGR_3652
Operon
DOOR ID:
420722
SGR_3652,
SGR_3653
View Structure
18
4468634-4468719
(+)
cobalamin
4468813-4472419 (+)
cobN
Putative cobalamin biosynthesis protein CobN
SGR_3825
Single gene
DOOR ID:
2283529
SGR_3825
(cobN)
View Structure
19
4570569-4570721
(+)
ydaO-yuaA
4570732-4571764 (+)
SGR_3897
Putative M23-family secreted peptidase
SGR_3897
Single gene
DOOR ID:
2283561
SGR_3897
View Structure
20
5189215-5189397
(+)
ydaO-yuaA
5189402-5190107 (+)
SGR_4438
Putative secreted protein
SGR_4438
Single gene
DOOR ID:
2283847
SGR_4438
View Structure
21
5437009-5437127
(+)
cobalamin
5437185-5438187 (+)
SGR_4627
Putative Fe uptake ABC transporter solute-binding protein
SGR_4627
Operon
DOOR ID:
420901
SGR_4627,
SGR_4628,
SGR_4629
View Structure
22
6310536-6310653
(+)
SAM-IV
6310831-6312211 (+)
SGR_5362
Putative aminotransferase
SGR_5362
Single gene
DOOR ID:
2284346
SGR_5362
View Structure
23
6344771-6344883
(-)
TPP
6343355-6343595 (-)
SGR_5393
SGR_5393
Operon
DOOR ID:
421034
SGR_5392
(thiG)
,
SGR_5393,
SGR_5394
View Structure
24
6624322-6624454
(-)
cobalamin
6623158-6624184 (-)
cobD
Cobalamin biosynthesis protein CobD
SGR_5645
Operon
DOOR ID:
421080
SGR_5641,
SGR_5642,
SGR_5643,
SGR_5644,
SGR_5645
(cobD)
View Structure
25
7179511-7179641
(+)
FMN
7179814-7180915 (+)
SGR_6089
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
SGR_6089
Operon
DOOR ID:
421169
SGR_6089,
SGR_6090,
SGR_6091,
SGR_6092,
SGR_6093
(ribH)
,
SGR_6094
(hisE)
View Structure
26
7259074-7259171
(+)
glycine
7259363-7262249 (+)
SGR_6151
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
SGR_6151
Single gene
DOOR ID:
2284708
SGR_6151
View Structure
27
7468145-7468330
(-)
ydaO-yuaA
7467670-7468141 (-)
SGR_6289
Putative NLP/P60-family protein
SGR_6289
Single gene
DOOR ID:
2284785
SGR_6289
View Structure
28
7932430-7932616
(+)
cobalamin
7932675-7933725 (+)
SGR_6640
Putative ABC transporter solute-binding protein
SGR_6640
Operon
DOOR ID:
421275
SGR_6640,
SGR_6641,
SGR_6642
View Structure
Genome:
Streptomyces griseus subsp. griseus NBRC 13350
(
NC_010572.1
);
Phylum:
Actinobacteria
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";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"559858-560045";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"559009-559852";i:10;s:1:"-";i:11;s:7:"SGR_478";i:12;s:0:"";i:13;s:7:"SGR_478";i:14;s:11:"Single gene";i:15;s:7:"2281955";i:16;s:7:"SGR_478";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"780795-780887";i:6;s:1:"-";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:13:"780533-780749";i:10;s:1:"-";i:11;s:7:"SGR_663";i:12;s:0:"";i:13;s:7:"SGR_663";i:14;s:6:"Operon";i:15;s:6:"420161";i:16;s:15:"SGR_662;SGR_663";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1131616-1131776";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1130659-1131613";i:10;s:1:"-";i:11;s:7:"SGR_955";i:12;s:38:"Putative M23-family secreted peptidase";i:13;s:7:"SGR_955";i:14;s:11:"Single gene";i:15;s:7:"2282180";i:16;s:7:"SGR_955";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1414970-1415063";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1415202-1415787";i:10;s:1:"+";i:11;s:8:"SGR_1199";i:12;s:0:"";i:13;s:8:"SGR_1199";i:14;s:11:"Single gene";i:15;s:7:"2282297";i:16;s:8:"SGR_1199";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1431231-1431376";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1428717-1431042";i:10;s:1:"-";i:11;s:8:"SGR_1212";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:8:"SGR_1212";i:14;s:11:"Single gene";i:15;s:7:"2282302";i:16;s:8:"SGR_1212";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1433077-1433256";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1433483-1434986";i:10;s:1:"+";i:11;s:8:"SGR_1215";i:12;s:45:"Putative NAD-dependent aldehyde dehydrogenase";i:13;s:8:"SGR_1215";i:14;s:6:"Operon";i:15;s:6:"420250";i:16;s:44:"SGR_1215;SGR_1216;SGR_1217;SGR_1218;SGR_1219";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1942190-1942266";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1940639-1942052";i:10;s:1:"-";i:11;s:8:"SGR_1647";i:12;s:0:"";i:13;s:8:"SGR_1647";i:14;s:11:"Single gene";i:15;s:7:"2282481";i:16;s:8:"SGR_1647";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1942429-1942499";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1942631-1945427";i:10;s:1:"+";i:11;s:8:"SGR_1648";i:12;s:0:"";i:13;s:8:"SGR_1648";i:14;s:6:"Operon";i:15;s:6:"420344";i:16;s:53:"SGR_1648;SGR_1649;SGR_1650;SGR_1651;SGR_1652;SGR_1653";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1950681-1950825";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1950936-1952265";i:10;s:1:"-";i:11;s:8:"SGR_1654";i:12;s:30:"Putative RNA methyltransferase";i:13;s:8:"SGR_1654";i:14;s:11:"Single gene";i:15;s:7:"2282482";i:16;s:8:"SGR_1654";i:17;s:27:"RNA processing [GO:0006396]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1986228-1986394";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1985398-1986214";i:10;s:1:"-";i:11;s:8:"SGR_1686";i:12;s:38:"Putative M23-family secreted peptidase";i:13;s:8:"SGR_1686";i:14;s:11:"Single gene";i:15;s:7:"2282493";i:16;s:8:"SGR_1686";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2208394-2208510";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2207214-2208390";i:10;s:1:"-";i:11;s:8:"SGR_1857";i:12;s:50:"Putative ABC transporter substrate-binding protein";i:13;s:8:"SGR_1857";i:14;s:6:"Operon";i:15;s:6:"420389";i:16;s:26:"SGR_1855;SGR_1856;SGR_1857";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2416132-2416229";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2416403-2417519";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"SGR_2045";i:14;s:6:"Operon";i:15;s:6:"420426";i:16;s:38:"SGR_2045(gcvT);SGR_2046;SGR_2047(glyA)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2717330-2717471";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2717606-2720021";i:10;s:1:"+";i:11;s:8:"SGR_2299";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:8:"SGR_2299";i:14;s:6:"Operon";i:15;s:6:"420478";i:16;s:17:"SGR_2299;SGR_2300";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3235829-3235995";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3237233-3237587";i:10;s:1:"-";i:11;s:8:"SGR_2735";i:12;s:34:"Putative integral membrane protein";i:13;s:8:"SGR_2735";i:14;s:11:"Single gene";i:15;s:7:"2283006";i:16;s:8:"SGR_2735";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3750231-3750358";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3748909-3750211";i:10;s:1:"-";i:11;s:8:"SGR_3228";i:12;s:27:"Putative threonine synthase";i:13;s:8:"SGR_3228";i:14;s:6:"Operon";i:15;s:6:"420640";i:16;s:17:"SGR_3227;SGR_3228";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4274187-4274320";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4270925-4272314";i:10;s:1:"-";i:11;s:8:"SGR_3652";i:12;s:0:"";i:13;s:8:"SGR_3652";i:14;s:6:"Operon";i:15;s:6:"420722";i:16;s:17:"SGR_3652;SGR_3653";i:17;s:0:"";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4468634-4468719";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4468813-4472419";i:10;s:1:"+";i:11;s:4:"cobN";i:12;s:44:"Putative cobalamin biosynthesis protein CobN";i:13;s:8:"SGR_3825";i:14;s:11:"Single gene";i:15;s:7:"2283529";i:16;s:14:"SGR_3825(cobN)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:19;a:19:{i:0;i:19;i:1;s:11:"NC_010572.1";i:2;s:47:"Streptomyces griseus subsp. griseus NBRC 13350 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