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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
159274-159433
(+)
glmS
159491-161288 (+)
Exig_0141
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Exig_0141
Single gene
DOOR ID:
2277746
Exig_0141
View Structure
2
216092-216276
(+)
lysine
218009-218192 (+)
Exig_0201
Exig_0201
Single gene
DOOR ID:
2277770
Exig_0201
View Structure
3
235041-235140
(+)
purine
235214-235799 (+)
Exig_0219
Xanthine phosphoribosyltransferase (XPRTase) (2)
Exig_0219
Operon
DOOR ID:
418468
Exig_0219,
Exig_0220
View Structure
4
425797-425900
(-)
SAM
425161-425692 (-)
Exig_0404
Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (1) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase)
Exig_0404
Single gene
DOOR ID:
2277854
Exig_0404
View Structure
5
430975-431063
(+)
ykkC-yxkD
431124-431454 (+)
Exig_0410
Small multidrug resistance protein
Exig_0410
Operon
DOOR ID:
418507
Exig_0410,
Exig_0411
View Structure
6
448816-448917
(-)
SAM
447544-448735 (-)
mtnW
2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
Exig_0430
Operon
DOOR ID:
418511
Exig_0427,
Exig_0428
(mtnB)
,
Exig_0429
(mtnX)
,
Exig_0430
(mtnW)
View Structure
7
449125-449227
(+)
SAM
449305-450475 (+)
mtnK
Methylthioribose kinase (MTR kinase) (00)
Exig_0431
Operon
DOOR ID:
418512
Exig_0431
(mtnK)
,
Exig_0432,
Exig_0433,
Exig_0434,
Exig_0435
View Structure
8
459660-459761
(+)
purine
459866-461411 (+)
Exig_0439
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Exig_0439
Single gene
DOOR ID:
2277866
Exig_0439
View Structure
9
466079-466180
(+)
purine
466267-467620 (+)
Exig_0444
Xanthine/uracil/vitamin C permease
Exig_0444
Single gene
DOOR ID:
2277871
Exig_0444
View Structure
10
474287-474388
(+)
purine
474479-474971 (+)
Exig_0447
N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)
Exig_0447
Operon
DOOR ID:
418514
Exig_0447,
Exig_0448,
Exig_0449,
Exig_0450,
Exig_0451,
Exig_0452,
Exig_0453,
Exig_0454,
Exig_0455,
Exig_0456,
Exig_0457,
Exig_0458
View Structure
11
518807-518985
(+)
lysine
519098-520298 (+)
Exig_0485
Aspartokinase
Exig_0485
Operon
DOOR ID:
418523
Exig_0485,
Exig_0486,
Exig_0487,
Exig_0488,
Exig_0489,
Exig_0490,
Exig_0491,
Exig_0492
View Structure
12
576921-577031
(+)
TPP
577148-577958 (+)
Exig_0540
Phosphomethylpyrimidine kinase
Exig_0540
Operon
DOOR ID:
418530
Exig_0540,
Exig_0541,
Exig_0542,
Exig_0543
View Structure
13
987623-987728
(+)
TPP
987801-988497 (+)
Exig_0935
Aminopyrimidine aminohydrolase
Exig_0935
Single gene
DOOR ID:
2278045
Exig_0935
View Structure
14
1239860-1239962
(+)
TPP
1240052-1240649 (+)
Exig_1198
Thiamine monophosphate synthase
Exig_1198
Operon
DOOR ID:
418671
Exig_1198,
Exig_1199,
Exig_1200,
Exig_1201
(thiG)
,
Exig_1202
View Structure
15
1547944-1548043
(-)
TPP
1547262-1547838 (-)
Exig_1584
YkoE
Exig_1584
Operon
DOOR ID:
418748
Exig_1582,
Exig_1583,
Exig_1584
View Structure
16
1877692-1877798
(-)
TPP
1877067-1877628 (-)
Exig_1920
Proton-coupled thiamine transporter YuaJ
Exig_1920
Operon
DOOR ID:
418812
Exig_1919,
Exig_1920
View Structure
17
2253233-2253359
(-)
SAM
2251896-2253105 (-)
Exig_2284
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Exig_2284
Single gene
DOOR ID:
2278558
Exig_2284
View Structure
18
2287514-2287654
(+)
FMN
2287808-2288375 (+)
Exig_2318
Riboflavin transporter
Exig_2318
Single gene
DOOR ID:
2278575
Exig_2318
View Structure
19
2309263-2309368
(-)
SAM
2308159-2309182 (-)
Exig_2342
Methionine import ATP-binding protein MetN
Exig_2342
Operon
DOOR ID:
418899
Exig_2340,
Exig_2341,
Exig_2342
View Structure
20
2505940-2506043
(+)
SAM
2506126-2507140 (+)
Exig_2540
Methionine import ATP-binding protein MetN
Exig_2540
Operon
DOOR ID:
418942
Exig_2540,
Exig_2541,
Exig_2542
View Structure
21
2525774-2525926
(-)
ydaO-yuaA
2525550-2525658 (-)
Exig_2552
Exig_2552
Single gene
DOOR ID:
2278652
Exig_2552
View Structure
22
2703493-2703637
(-)
FMN
2702290-2703337 (-)
Exig_2716
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Exig_2716
Operon
DOOR ID:
418973
Exig_2713,
Exig_2714,
Exig_2715,
Exig_2716
View Structure
23
2707649-2707752
(-)
SAM
2706531-2707563 (-)
Exig_2720
Methionine import ATP-binding protein MetN
Exig_2720
Operon
DOOR ID:
418974
Exig_2717,
Exig_2718,
Exig_2719,
Exig_2720
View Structure
24
2708001-2708104
(+)
SAM
2708163-2708925 (+)
Exig_2721
Esterase
Exig_2721
Single gene
DOOR ID:
2278717
Exig_2721
View Structure
25
2804795-2804898
(+)
SAM
2804976-2806284 (+)
Exig_2822
Na+/H+ antiporter NhaC
Exig_2822
Single gene
DOOR ID:
2278758
Exig_2822
View Structure
26
2949549-2949654
(-)
SAM
2948418-2949477 (-)
Exig_2964
Alkanesulfonate monooxygenase
Exig_2964
Operon
DOOR ID:
419021
Exig_2963,
Exig_2964
View Structure
27
2963330-2963505
(+)
lysine
2963610-2965194 (+)
Exig_2980
Na+/H+ antiporter NhaC
Exig_2980
Single gene
DOOR ID:
2278844
Exig_2980
View Structure
28
2977031-2977132
(-)
SAM
2975544-2976945 (-)
Exig_2992
Amino acid permease-associated region
Exig_2992
Operon
DOOR ID:
419025
Exig_2991
(mmuM)
,
Exig_2992
View Structure
29
2993054-2993129
(-)
glycine
2991523-2992891 (-)
Exig_3004
Amino acid permease-associated region
Exig_3004
Single gene
DOOR ID:
2278857
Exig_3004
View Structure
Genome:
Exiguobacterium sibiricum 255-15
(
NC_010556.1
);
Phylum:
Firmicutes
a:30:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"159274-159433";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"159491-161288";i:10;s:1:"+";i:11;s:9:"Exig_0141";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Exig_0141";i:14;s:11:"Single gene";i:15;s:7:"2277746";i:16;s:9:"Exig_0141";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"216092-216276";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"218009-218192";i:10;s:1:"+";i:11;s:9:"Exig_0201";i:12;s:0:"";i:13;s:9:"Exig_0201";i:14;s:11:"Single gene";i:15;s:7:"2277770";i:16;s:9:"Exig_0201";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"235041-235140";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"235214-235799";i:10;s:1:"+";i:11;s:9:"Exig_0219";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"Exig_0219";i:14;s:6:"Operon";i:15;s:6:"418468";i:16;s:19:"Exig_0219;Exig_0220";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"425797-425900";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"425161-425692";i:10;s:1:"-";i:11;s:9:"Exig_0404";i:12;s:156:"Peptide methionine sulfoxide reductase MsrA (Protein-methionine-S-oxide reductase) (1) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase)";i:13;s:9:"Exig_0404";i:14;s:11:"Single gene";i:15;s:7:"2277854";i:16;s:9:"Exig_0404";i:17;s:50:"cellular protein modification process [GO:0006464]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"430975-431063";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:13:"431124-431454";i:10;s:1:"+";i:11;s:9:"Exig_0410";i:12;s:34:"Small multidrug resistance protein";i:13;s:9:"Exig_0410";i:14;s:6:"Operon";i:15;s:6:"418507";i:16;s:19:"Exig_0410;Exig_0411";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"448816-448917";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"447544-448735";i:10;s:1:"-";i:11;s:4:"mtnW";i:12;s:100:"2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)";i:13;s:9:"Exig_0430";i:14;s:6:"Operon";i:15;s:6:"418511";i:16;s:57:"Exig_0427;Exig_0428(mtnB);Exig_0429(mtnX);Exig_0430(mtnW)";i:17;s:88:"carbon fixation [GO:0015977]; L-methionine salvage from methylthioadenosine [GO:0019509]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"449125-449227";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"449305-450475";i:10;s:1:"+";i:11;s:4:"mtnK";i:12;s:41:"Methylthioribose kinase (MTR kinase) (00)";i:13;s:9:"Exig_0431";i:14;s:6:"Operon";i:15;s:6:"418512";i:16;s:55:"Exig_0431(mtnK);Exig_0432;Exig_0433;Exig_0434;Exig_0435";i:17;s:58:"L-methionine salvage from methylthioadenosine [GO:0019509]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"459660-459761";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"459866-461411";i:10;s:1:"+";i:11;s:9:"Exig_0439";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:9:"Exig_0439";i:14;s:11:"Single gene";i:15;s:7:"2277866";i:16;s:9:"Exig_0439";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"466079-466180";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"466267-467620";i:10;s:1:"+";i:11;s:9:"Exig_0444";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:9:"Exig_0444";i:14;s:11:"Single gene";i:15;s:7:"2277871";i:16;s:9:"Exig_0444";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"474287-474388";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"474479-474971";i:10;s:1:"+";i:11;s:9:"Exig_0447";i:12;s:117:"N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)";i:13;s:9:"Exig_0447";i:14;s:6:"Operon";i:15;s:6:"418514";i:16;s:119:"Exig_0447;Exig_0448;Exig_0449;Exig_0450;Exig_0451;Exig_0452;Exig_0453;Exig_0454;Exig_0455;Exig_0456;Exig_0457;Exig_0458";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"518807-518985";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"519098-520298";i:10;s:1:"+";i:11;s:9:"Exig_0485";i:12;s:14:"Aspartokinase ";i:13;s:9:"Exig_0485";i:14;s:6:"Operon";i:15;s:6:"418523";i:16;s:79:"Exig_0485;Exig_0486;Exig_0487;Exig_0488;Exig_0489;Exig_0490;Exig_0491;Exig_0492";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010556.1";i:2;s:33:"Exiguobacterium sibiricum 255-15 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