RiboswitchDB

Genome: Burkholderia ambifaria MC40-6 chromosome II (NC_010552.1); Phylum: Betaproteobacteria

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

257840-258016 (-)

yybP-ykoY

256746-257757 (-)

BamMC406_3347

Sodium/calcium exchanger membrane region

Single gene

DOOR ID: 2275133

BamMC406_3347

2

643438-643541 (+)

fluoride

644949-645663 (-)

BamMC406_3686

Riboflavin synthase; alpha subunit

Single gene

DOOR ID: 2275293

BamMC406_3686

3

1427696-1427888 (+)

cobalamin

1427978-1428101 (+)

BamMC406_4346

Operon

DOOR ID: 417473

BamMC406_4346,
BamMC406_4347

4

2367929-2368071 (-)

cobalamin

2367685-2367895 (-)

BamMC406_5178

Operon

DOOR ID: 417624

BamMC406_5177,
BamMC406_5178

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