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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
62522-62679
(-)
ydaO-yuaA
61603-62221 (-)
exoD2
Exopolysaccharide synthesis protein
cce_0068
Operon
DOOR ID:
415631
cce_0065,
cce_0066,
cce_0067,
cce_0068
(exoD2)
View Structure
2
950063-950213
(+)
cobalamin
950280-950949 (+)
hupE
Hydrogenase accessory protein
cce_0951
Single gene
DOOR ID:
2271675
cce_0951
(hupE)
View Structure
3
1043231-1043292
(+)
glutamine
1043326-1043497 (+)
cce_1045
cce_1045
Operon
DOOR ID:
415808
cce_1045,
cce_1046
View Structure
4
2393902-2393983
(+)
glutamine
2394016-2394241 (+)
cce_2344
cce_2344
Single gene
DOOR ID:
2272394
cce_2344
View Structure
5
2707170-2707245
(-)
glutamine
2706838-2707129 (-)
cce_2638
cce_2638
Single gene
DOOR ID:
2272556
cce_2638
View Structure
6
3068943-3069038
(+)
TPP
3069045-3070425 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
cce_3025
Single gene
DOOR ID:
2272778
cce_3025
(thiC)
View Structure
Genome:
Cyanothece sp. ATCC 51142 circular chromosome
(
NC_010546.1
);
Phylum:
Cyanobacteria/Melainabacteria group
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010546.1";i:2;s:45:"Cyanothece sp. ATCC 51142 circular chromosome";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:11:"62522-62679";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:11:"61603-62221";i:10;s:1:"-";i:11;s:5:"exoD2";i:12;s:35:"Exopolysaccharide synthesis protein";i:13;s:8:"cce_0068";i:14;s:6:"Operon";i:15;s:6:"415631";i:16;s:42:"cce_0065;cce_0066;cce_0067;cce_0068(exoD2)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010546.1";i:2;s:45:"Cyanothece sp. ATCC 51142 circular chromosome";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:13:"950063-950213";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"950280-950949";i:10;s:1:"+";i:11;s:4:"hupE";i:12;s:29:"Hydrogenase accessory protein";i:13;s:8:"cce_0951";i:14;s:11:"Single gene";i:15;s:7:"2271675";i:16;s:14:"cce_0951(hupE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010546.1";i:2;s:45:"Cyanothece sp. ATCC 51142 circular chromosome";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"1043231-1043292";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"1043326-1043497";i:10;s:1:"+";i:11;s:8:"cce_1045";i:12;s:0:"";i:13;s:8:"cce_1045";i:14;s:6:"Operon";i:15;s:6:"415808";i:16;s:17:"cce_1045;cce_1046";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010546.1";i:2;s:45:"Cyanothece sp. ATCC 51142 circular chromosome";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2393902-2393983";i:6;s:1:"+";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"2394016-2394241";i:10;s:1:"+";i:11;s:8:"cce_2344";i:12;s:0:"";i:13;s:8:"cce_2344";i:14;s:11:"Single gene";i:15;s:7:"2272394";i:16;s:8:"cce_2344";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010546.1";i:2;s:45:"Cyanothece sp. ATCC 51142 circular chromosome";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"2707170-2707245";i:6;s:1:"-";i:7;s:9:"glutamine";i:8;s:0:"";i:9;s:15:"2706838-2707129";i:10;s:1:"-";i:11;s:8:"cce_2638";i:12;s:0:"";i:13;s:8:"cce_2638";i:14;s:11:"Single gene";i:15;s:7:"2272556";i:16;s:8:"cce_2638";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010546.1";i:2;s:45:"Cyanothece sp. ATCC 51142 circular chromosome";i:3;s:35:"Cyanobacteria/Melainabacteria group";i:4;s:7:"1798711";i:5;s:15:"3068943-3069038";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3069045-3070425";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"cce_3025";i:14;s:11:"Single gene";i:15;s:7:"2272778";i:16;s:14:"cce_3025(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}