Genome: Clostridium botulinum A3 str. Loch Maree (NC_010520.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 193810-193911 (+)SAM193991-195167 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLK_3346Single gene

DOOR ID: 2264483		CLK_3346 (metK) View Structure
2 208309-208425 (+)FMN208521-209115 (+)CLK_3355

Riboflavin transporter		CLK_3355Single gene

DOOR ID: 2263755		CLK_3355 View Structure
3 234804-234969 (+)ykoK235172-236438 (+)CLK_3382

PRC-barrel domain/MgtE domain/CBS domain protein		CLK_3382Single gene

DOOR ID: 2264994		CLK_3382 View Structure
4 292594-292769 (+)lysine292899-294363 (+)lysP

Putative lysine-specific permease		CLK_3428Single gene

DOOR ID: 2264863		CLK_3428 (lysP) View Structure
5 379398-379499 (+)purine379675-380977 (+)CLK_3505

Xanthine/uracil permease family protein		CLK_3505Operon

DOOR ID: 411508		CLK_3505,
CLK_3506 (xpt)		 View Structure
6 517204-517378 (+)lysine517539-519306 (+)CLK_3623

Na+/H+ antiporter family protein		CLK_3623Single gene

DOOR ID: 2265159		CLK_3623 View Structure
7 554579-554682 (-)TPP553473-554274 (-)thiD

Phosphomethylpyrimidine kinase 		CLK_3654Single gene

DOOR ID: 2265156		CLK_3654 (thiD) View Structure
8 678119-678224 (+)TPP678279-678963 (+)CLK_3765

Probable proton-coupled thiamine transporter YuaJ		CLK_3765Single gene

DOOR ID: 2264617		CLK_3765 View Structure
9 777400-777592 (-)cobalamin775674-777261 (-)CLK_0045

Periplasmic dipeptide transport protein		CLK_0045Operon

DOOR ID: 411562		CLK_0041,
CLK_0042,
CLK_0043,
CLK_0044,
CLK_0045		 View Structure
10 801395-801581 (+)cobalamin801727-802786 (+)CLK_0066

Putative iron ABC transporter; iron-binding protein		CLK_0066Single gene

DOOR ID: 2265367		CLK_0066 View Structure
11 924120-924220 (+)THF924315-925095 (+)CLK_0194

Putative membrane protein		CLK_0194Single gene

DOOR ID: 2263887		CLK_0194 View Structure
12 1068729-1068909 (+)cobalamin1069050-1070532 (+)cobQ

Cobyric acid synthase		CLK_0351Operon

DOOR ID: 411611		CLK_0351 (cobQ),
CLK_0352 (cobD)		 View Structure
13 1253646-1253748 (+)SAM1253852-1254809 (+)CLK_0527

Methionine import ATP-binding protein MetN 		CLK_0527Operon

DOOR ID: 411645		CLK_0527,
CLK_0528,
CLK_0529		 View Structure
14 1433829-1433898 (+)glycine1433989-1434367 (+)grdX

GrdX protein		CLK_0695Single gene

DOOR ID: 2264121		CLK_0695 (grdX) View Structure
15 1515905-1516028 (-)ydaO-yuaA1515120-1515900 (-)CLK_0767

Cell Wall hydrolase		CLK_0767Single gene

DOOR ID: 2263796		CLK_0767 View Structure
16 1779920-1780014 (+)Nico1780125-1782660 (+)CLK_1018

Putative membrane protein		CLK_1018Operon

DOOR ID: 411728		CLK_1018,
CLK_1019		 View Structure
17 1796129-1796175 (+)PreQ11796539-1797535 (+)CLK_1031

2-hydroxyglutaryl-CoA dehydratase; D-component		CLK_1031Single gene

DOOR ID: 2263693		CLK_1031 View Structure
18 1858476-1858579 (+)SAM1858701-1859589 (+)metF

Methylenetetrahydrofolate reductase (0)		CLK_1085Single gene

DOOR ID: 2264333		CLK_1085 (metF) View Structure
19 2040019-2040077 (-)fluoride2038771-2039959 (-)CLK_1236

Transporter; monovalent cation:proton antiporter-2 (CPA2) family		CLK_1236Single gene

DOOR ID: 2264670		CLK_1236 View Structure
20 2069826-2069931 (-)SAM2068420-2069701 (-)CLK_1266

O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein		CLK_1266Operon

DOOR ID: 411767		CLK_1264 (metA),
CLK_1265 (hom),
CLK_1266		 View Structure
21 2258867-2258968 (-)purine2257735-2258800 (-)CLK_1460

Xanthine/uracil permease family protein		CLK_1460Operon

DOOR ID: 411811		CLK_1459,
CLK_1460		 View Structure
22 2520623-2520729 (-)TPP2519750-2520320 (-)thiW

Putative ThiW protein		CLK_1696Operon

DOOR ID: 411854		CLK_1695 (thiM),
CLK_1696 (thiW)		 View Structure
23 3064477-3064582 (-)ykkC-yxkD3063960-3064398 (-)CLK_2218

MutT/NUDIX family protein		CLK_2218Single gene

DOOR ID: 2265109		CLK_2218 View Structure
24 3118379-3118497 (-)FMN3117059-3118157 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CLK_2263Operon

DOOR ID: 411957		CLK_2262 (ribE),
CLK_2263 (ribD)		 View Structure
25 3124692-3124853 (-)ykoK3121678-3124324 (-)mgtA

Magnesium-importing ATPase 		CLK_2266Single gene

DOOR ID: 2264876		CLK_2266 (mgtA) View Structure
26 3133463-3133564 (-)purine3132891-3133371 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		CLK_2274Operon

DOOR ID: 411959		CLK_2270 (purN),
CLK_2271 (purM),
CLK_2272 (purF),
CLK_2273 (purC),
CLK_2274 (purE)		 View Structure
27 3160839-3160938 (-)purine3159311-3160754 (-)CLK_2295

Xanthine/uracil permease family protein		CLK_2295Single gene

DOOR ID: 2264497		CLK_2295 View Structure
28 3163113-3163202 (-)glycine3161343-3162696 (-)CLK_2296

Sodium:alanine symporter family protein		CLK_2296Single gene

DOOR ID: 2264870		CLK_2296 View Structure
29 3175073-3175172 (-)TPP3173599-3174976 (-)purF

Amidophosphoribosyltransferase (ATase) (4) (Glutamine phosphoribosylpyrophosphate amidotransferase) (GPATase)		CLK_2304Single gene

DOOR ID: 2264447		CLK_2304 (purF) View Structure
30 3494923-3494982 (-)fluoride3494046-3494199 (-)CLK_2605

CLK_2605Operon

DOOR ID: 412026		CLK_2604,
CLK_2605		 View Structure
31 3504838-3504928 (-)ZMP-ZTP3502290-3504519 (-)pfl

Formate acetyltransferase 1 (4)		CLK_2613Single gene

DOOR ID: 2264156		CLK_2613 (pfl) View Structure
32 3584740-3584837 (-)purine3583197-3584652 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CLK_2712Operon

DOOR ID: 412042		CLK_2711 (guaA),
CLK_2712 (guaB)		 View Structure
33 3641078-3641246 (-)lysine3639712-3640915 (-)lysC

Aspartokinase 		CLK_2754Operon

DOOR ID: 412048		CLK_2753 (lysA),
CLK_2754 (lysC)		 View Structure
34 3734601-3734711 (-)SAM3733139-3734465 (-)CLK_2835

Na+/H+ antiporter family protein		CLK_2835Single gene

DOOR ID: 2265371		CLK_2835 View Structure
35 3753253-3753433 (-)glmS3751383-3753210 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CLK_2853Single gene

DOOR ID: 2265169		CLK_2853 (glmS) View Structure
36 3773118-3773244 (+)ydaO-yuaA3774168-3775032 (-)CLK_2876

Oxidoreductase; pyridine nucleotide-disulphide family		CLK_2876Operon

DOOR ID: 412074		CLK_2876 View Structure