About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
876451-876566
(+)
glycine
876663-878040 (+)
HSM_0760
Amino acid carrier protein
HSM_0760
Operon
DOOR ID:
411173
HSM_0759,
HSM_0760
View Structure
2
1413716-1413887
(+)
lysine
1413974-1415522 (+)
HSM_1255
Na? antiporter NhaC
HSM_1255
Single gene
DOOR ID:
2263143
HSM_1255
View Structure
3
1455599-1455736
(-)
MOCO
1453032-1455501 (-)
HSM_1275
Molybdopterin guanine dinucleotide-containing S/N-oxide reductase
HSM_1275
Single gene
DOOR ID:
2263155
HSM_1275
View Structure
4
1700549-1700639
(-)
TPP
1699467-1700484 (-)
HSM_1488
Thiamine ABC transporter; periplasmic binding protein
HSM_1488
Operon
DOOR ID:
411333
HSM_1485,
HSM_1486,
HSM_1487
(thiP)
,
HSM_1488
View Structure
5
1735879-1736013
(-)
MOCO
1734387-1734864 (-)
HSM_1508
Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)
HSM_1508
Operon
DOOR ID:
411341
HSM_1506,
HSM_1507
(moaD)
,
HSM_1508,
HSM_1509
(moaA)
View Structure
6
2229253-2229397
(+)
FMN
2229505-2230150 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
HSM_1983
Single gene
DOOR ID:
2263380
HSM_1983
(ribB)
View Structure
Genome:
Haemophilus somnus 2336
(
NC_010519.1
);
Phylum:
Gammaproteobacteria
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010519.1";i:2;s:24:"Haemophilus somnus 2336 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"876451-876566";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"876663-878040";i:10;s:1:"+";i:11;s:8:"HSM_0760";i:12;s:26:"Amino acid carrier protein";i:13;s:8:"HSM_0760";i:14;s:6:"Operon";i:15;s:6:"411173";i:16;s:17:"HSM_0759;HSM_0760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010519.1";i:2;s:24:"Haemophilus somnus 2336 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1413716-1413887";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1413974-1415522";i:10;s:1:"+";i:11;s:8:"HSM_1255";i:12;s:19:"Na? antiporter NhaC";i:13;s:8:"HSM_1255";i:14;s:11:"Single gene";i:15;s:7:"2263143";i:16;s:8:"HSM_1255";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010519.1";i:2;s:24:"Haemophilus somnus 2336 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1455599-1455736";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1453032-1455501";i:10;s:1:"-";i:11;s:8:"HSM_1275";i:12;s:66:"Molybdopterin guanine dinucleotide-containing S/N-oxide reductase ";i:13;s:8:"HSM_1275";i:14;s:11:"Single gene";i:15;s:7:"2263155";i:16;s:8:"HSM_1275";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010519.1";i:2;s:24:"Haemophilus somnus 2336 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1700549-1700639";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1699467-1700484";i:10;s:1:"-";i:11;s:8:"HSM_1488";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:8:"HSM_1488";i:14;s:6:"Operon";i:15;s:6:"411333";i:16;s:41:"HSM_1485;HSM_1486;HSM_1487(thiP);HSM_1488";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010519.1";i:2;s:24:"Haemophilus somnus 2336 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1735879-1736013";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1734387-1734864";i:10;s:1:"-";i:11;s:8:"HSM_1508";i:12;s:91:"Cyclic pyranopterin monophosphate synthase (7) (Molybdenum cofactor biosynthesis protein C)";i:13;s:8:"HSM_1508";i:14;s:6:"Operon";i:15;s:6:"411341";i:16;s:47:"HSM_1506;HSM_1507(moaD);HSM_1508;HSM_1509(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010519.1";i:2;s:24:"Haemophilus somnus 2336 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2229253-2229397";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2229505-2230150";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"HSM_1983";i:14;s:11:"Single gene";i:15;s:7:"2263380";i:16;s:14:"HSM_1983(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}