Genome: Clostridium botulinum B1 str. Okra (NC_010516.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 201135-201236 (+)SAM201315-202491 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CLD_0612Single gene

DOOR ID: 2261419		CLD_0612 (metK) View Structure
2 215583-215699 (+)FMN215794-216388 (+)CLD_0603

Riboflavin transporter		CLD_0603Single gene

DOOR ID: 2262566		CLD_0603 View Structure
3 244545-244710 (+)ykoK244913-246179 (+)CLD_0572

PRC-barrel domain/MgtE domain/CBS domain protein		CLD_0572Single gene

DOOR ID: 2261615		CLD_0572 View Structure
4 313006-313181 (+)lysine313310-314774 (+)lysP

Putative lysine-specific permease		CLD_0514Single gene

DOOR ID: 2262645		CLD_0514 (lysP) View Structure
5 395771-395872 (+)purine396048-397350 (+)CLD_0437

Xanthine/uracil permease family protein		CLD_0437Operon

DOOR ID: 410380		CLD_0437,
CLD_0436 (xpt)		 View Structure
6 534131-534305 (+)lysine534466-536233 (+)CLD_0322

Na+/H+ antiporter family protein		CLD_0322Single gene

DOOR ID: 2262675		CLD_0322 View Structure
7 570186-570289 (-)TPP569079-569880 (-)thiD

Phosphomethylpyrimidine kinase 		CLD_0291Single gene

DOOR ID: 2262285		CLD_0291 (thiD) View Structure
8 680609-680714 (+)TPP680771-681455 (+)CLD_0195

Probable proton-coupled thiamine transporter YuaJ		CLD_0195Single gene

DOOR ID: 2261538		CLD_0195 View Structure
9 904743-904843 (+)THF904938-905718 (+)CLD_3776

Putative membrane protein		CLD_3776Single gene

DOOR ID: 2261678		CLD_3776 View Structure
10 1033158-1033338 (+)cobalamin1033479-1034961 (+)cobQ

Cobyric acid synthase		CLD_3646Operon

DOOR ID: 410475		CLD_3646 (cobQ),
CLD_3645 (cobD)		 View Structure
11 1208975-1209077 (+)SAM1209181-1210138 (+)CLD_3476

Methionine import ATP-binding protein MetN 		CLD_3476Operon

DOOR ID: 410512		CLD_3476,
CLD_3475,
CLD_3474		 View Structure
12 1387302-1387371 (+)glycine1387461-1387839 (+)grdX

GrdX protein		CLD_3312Single gene

DOOR ID: 2261519		CLD_3312 (grdX) View Structure
13 1466755-1466878 (-)ydaO-yuaA1465976-1466750 (-)CLD_3235

Cell Wall hydrolase		CLD_3235Single gene

DOOR ID: 2261346		CLD_3235 View Structure
14 1500244-1500357 (+)FMN1500619-1501258 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		CLD_3201Single gene

DOOR ID: 2261483		CLD_3201 (ribB) View Structure
15 1702810-1702899 (+)Nico1703008-1705543 (+)CLD_3018

Putative membrane protein		CLD_3018Operon

DOOR ID: 410591		CLD_3018,
CLD_3017		 View Structure
16 1798615-1798718 (+)SAM1798839-1799727 (+)metF

Methylenetetrahydrofolate reductase (0)		CLD_2935Single gene

DOOR ID: 2262181		CLD_2935 (metF) View Structure
17 1975343-1975401 (-)fluoride1974098-1975286 (-)CLD_2790

Transporter; monovalent cation:proton antiporter-2 (CPA2) family		CLD_2790Single gene

DOOR ID: 2262408		CLD_2790 View Structure
18 2005003-2005108 (-)SAM2003597-2004878 (-)CLD_2761

O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein		CLD_2761Operon

DOOR ID: 410635		CLD_2763 (metA),
CLD_2762 (hom),
CLD_2761		 View Structure
19 2153609-2153710 (-)purine2152477-2153542 (-)CLD_2618

Xanthine/uracil permease family protein		CLD_2618Operon

DOOR ID: 410668		CLD_2619,
CLD_2618		 View Structure
20 2451080-2451186 (-)TPP2450207-2450777 (-)thiW

Putative ThiW protein		CLD_2321Operon

DOOR ID: 410722		CLD_2322 (thiM),
CLD_2321 (thiW)		 View Structure
21 2491960-2492055 (-)purine2490551-2491865 (-)CLD_2271

5-methylthioadenosine/S-adenosylhomocysteine deaminase (MTA/SAH deaminase) (1)		CLD_2271Single gene

DOOR ID: 2261956		CLD_2271 View Structure
22 3020947-3021052 (-)ykkC-yxkD3020429-3020867 (-)CLD_1745

MutT/nudix family protein		CLD_1745Single gene

DOOR ID: 2262505		CLD_1745 View Structure
23 3097832-3097950 (-)FMN3096510-3097608 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CLD_1676Operon

DOOR ID: 410840		CLD_1677 (ribE),
CLD_1676 (ribD)		 View Structure
24 3104108-3104269 (-)ykoK3101093-3103739 (-)mgtA

Magnesium-translocating P-type ATPase 		CLD_1673Single gene

DOOR ID: 2262944		CLD_1673 (mgtA) View Structure
25 3116909-3117010 (-)purine3116338-3116818 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		CLD_1662Operon

DOOR ID: 410842		CLD_1664 (purF),
CLD_1663 (purC),
CLD_1662 (purE)		 View Structure
26 3144600-3144699 (-)purine3143072-3144515 (-)CLD_1641

Xanthine/uracil permease family protein		CLD_1641Single gene

DOOR ID: 2262246		CLD_1641 View Structure
27 3146873-3146962 (-)glycine3145103-3146456 (-)CLD_1640

Sodium:alanine symporter family protein		CLD_1640Single gene

DOOR ID: 2261687		CLD_1640 View Structure
28 3162595-3162694 (-)TPP3161121-3162498 (-)purF

Amidophosphoribosyltransferase (ATase) (4) (Glutamine phosphoribosylpyrophosphate amidotransferase) (GPATase)		CLD_1630Single gene

DOOR ID: 2262985		CLD_1630 (purF) View Structure
29 3167314-3167427 (+)FMN3167787-3168429 (+)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		CLD_1623Single gene

DOOR ID: 2262121		CLD_1623 (ribB) View Structure
30 3485206-3485265 (-)fluoride3484783-3484936 (-)CLD_1324

CLD_1324Operon

DOOR ID: 410907		CLD_1325,
CLD_1324		 View Structure
31 3495198-3495288 (-)ZMP-ZTP3492651-3494880 (-)pfl

Formate acetyltransferase 1 (4)		CLD_1316Single gene

DOOR ID: 2262560		CLD_1316 (pfl) View Structure
32 3567778-3567875 (-)purine3566235-3567690 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)		CLD_1227Operon

DOOR ID: 410922		CLD_1228 (guaA),
CLD_1227 (guaB)		 View Structure
33 3625012-3625180 (-)lysine3623646-3624849 (-)lysC

Aspartokinase 		CLD_1184Operon

DOOR ID: 410928		CLD_1185 (lysA),
CLD_1184 (lysC)		 View Structure
34 3714547-3714657 (-)SAM3713084-3714410 (-)CLD_1105

Na+/H+ antiporter family protein		CLD_1105Single gene

DOOR ID: 2262813		CLD_1105 View Structure
35 3723877-3724088 (-)glmS3722007-3723834 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CLD_1096Single gene

DOOR ID: 2262029		CLD_1096 (glmS) View Structure
36 3743604-3743730 (+)ydaO-yuaA3744239-3744431 (+)CLD_1073

CLD_1073Operon

DOOR ID: 410953		CLD_1074,
CLD_1073		 View Structure