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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
191642-191775
(-)
glycine
190439-191558 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcenmc03_0159
Operon
DOOR ID:
407272
Bcenmc03_0157,
Bcenmc03_0158,
Bcenmc03_0159
(gcvT)
View Structure
2
191811-191914
(-)
glycine
190439-191558 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bcenmc03_0159
Operon
DOOR ID:
407272
Bcenmc03_0157,
Bcenmc03_0158,
Bcenmc03_0159
(gcvT)
View Structure
3
282558-282675
(+)
SAH
282707-284126 (+)
Bcenmc03_0254
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bcenmc03_0254
Single gene
DOOR ID:
2253967
Bcenmc03_0254
View Structure
4
430659-430782
(+)
TPP
431007-432144 (+)
Bcenmc03_0389
FAD dependent oxidoreductase
Bcenmc03_0389
Operon
DOOR ID:
407315
Bcenmc03_0389,
Bcenmc03_0390,
Bcenmc03_0391
(thiG)
,
Bcenmc03_0392
View Structure
5
862927-863027
(+)
ZMP-ZTP
863164-864412 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Bcenmc03_0775
Operon
DOOR ID:
407401
Bcenmc03_0775
(glyA)
,
Bcenmc03_0776
(nrdR)
View Structure
6
1078008-1078145
(-)
yybP-ykoY
1077356-1077929 (-)
Bcenmc03_0976
Bcenmc03_0976
Single gene
DOOR ID:
2254203
Bcenmc03_0976
View Structure
7
1316594-1316710
(-)
TPP
1314537-1316469 (-)
Bcenmc03_1195
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bcenmc03_1195
Single gene
DOOR ID:
2254298
Bcenmc03_1195
View Structure
8
1814873-1815109
(-)
cobalamin
1813953-1814838 (-)
Bcenmc03_1628
Uroporphyrin-III C-methyltransferase
Bcenmc03_1628
Operon
DOOR ID:
407570
Bcenmc03_1625,
Bcenmc03_1626,
Bcenmc03_1627,
Bcenmc03_1628
View Structure
9
1817466-1817732
(+)
cobalamin
1818059-1819148 (+)
Bcenmc03_1630
Cobalamin biosynthesis protein CobW
Bcenmc03_1630
Operon
DOOR ID:
407571
Bcenmc03_1630,
Bcenmc03_1631
(cobN)
,
Bcenmc03_1632,
Bcenmc03_1633,
Bcenmc03_1634,
Bcenmc03_1635
View Structure
10
1840064-1840255
(-)
cobalamin
1838593-1840042 (-)
Bcenmc03_1647
Precorrin-3B synthase
Bcenmc03_1647
Operon
DOOR ID:
407574
Bcenmc03_1644,
Bcenmc03_1645,
Bcenmc03_1646
(cobH)
,
Bcenmc03_1647
View Structure
11
2233764-2233885
(-)
SAH
2231648-2233268 (-)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
Bcenmc03_2009
Single gene
DOOR ID:
2254629
Bcenmc03_2009
(guaA)
View Structure
12
2577794-2577838
(-)
mini-ykkC
2577450-2577771 (-)
Bcenmc03_2305
Bcenmc03_2305
Single gene
DOOR ID:
2254734
Bcenmc03_2305
View Structure
13
2754459-2754708
(-)
cobalamin
2753301-2754417 (-)
Bcenmc03_2460
Transport system permease protein
Bcenmc03_2460
Operon
DOOR ID:
407737
Bcenmc03_2459,
Bcenmc03_2460
View Structure
14
3027800-3027948
(-)
FMN
3026970-3027681 (-)
Bcenmc03_2717
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Bcenmc03_2717
Single gene
DOOR ID:
2254932
Bcenmc03_2717
View Structure
Genome:
Burkholderia cenocepacia MC0-3 chromosome I
(
NC_010508.1
);
Phylum:
Betaproteobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"191642-191775";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"190439-191558";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"Bcenmc03_0159";i:14;s:6:"Operon";i:15;s:6:"407272";i:16;s:47:"Bcenmc03_0157;Bcenmc03_0158;Bcenmc03_0159(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"191811-191914";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"190439-191558";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:13:"Bcenmc03_0159";i:14;s:6:"Operon";i:15;s:6:"407272";i:16;s:47:"Bcenmc03_0157;Bcenmc03_0158;Bcenmc03_0159(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"282558-282675";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"282707-284126";i:10;s:1:"+";i:11;s:13:"Bcenmc03_0254";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:13:"Bcenmc03_0254";i:14;s:11:"Single gene";i:15;s:7:"2253967";i:16;s:13:"Bcenmc03_0254";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"430659-430782";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"431007-432144";i:10;s:1:"+";i:11;s:13:"Bcenmc03_0389";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:13:"Bcenmc03_0389";i:14;s:6:"Operon";i:15;s:6:"407315";i:16;s:61:"Bcenmc03_0389;Bcenmc03_0390;Bcenmc03_0391(thiG);Bcenmc03_0392";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"862927-863027";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"863164-864412";i:10;s:1:"+";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:13:"Bcenmc03_0775";i:14;s:6:"Operon";i:15;s:6:"407401";i:16;s:39:"Bcenmc03_0775(glyA);Bcenmc03_0776(nrdR)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1078008-1078145";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1077356-1077929";i:10;s:1:"-";i:11;s:13:"Bcenmc03_0976";i:12;s:0:"";i:13;s:13:"Bcenmc03_0976";i:14;s:11:"Single gene";i:15;s:7:"2254203";i:16;s:13:"Bcenmc03_0976";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1316594-1316710";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1314537-1316469";i:10;s:1:"-";i:11;s:13:"Bcenmc03_1195";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:13:"Bcenmc03_1195";i:14;s:11:"Single gene";i:15;s:7:"2254298";i:16;s:13:"Bcenmc03_1195";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1814873-1815109";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1813953-1814838";i:10;s:1:"-";i:11;s:13:"Bcenmc03_1628";i:12;s:36:"Uroporphyrin-III C-methyltransferase";i:13;s:13:"Bcenmc03_1628";i:14;s:6:"Operon";i:15;s:6:"407570";i:16;s:55:"Bcenmc03_1625;Bcenmc03_1626;Bcenmc03_1627;Bcenmc03_1628";i:17;s:84:"oxidation-reduction process [GO:0055114]; siroheme biosynthetic process [GO:0019354]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1817466-1817732";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1818059-1819148";i:10;s:1:"+";i:11;s:13:"Bcenmc03_1630";i:12;s:35:"Cobalamin biosynthesis protein CobW";i:13;s:13:"Bcenmc03_1630";i:14;s:6:"Operon";i:15;s:6:"407571";i:16;s:89:"Bcenmc03_1630;Bcenmc03_1631(cobN);Bcenmc03_1632;Bcenmc03_1633;Bcenmc03_1634;Bcenmc03_1635";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1840064-1840255";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1838593-1840042";i:10;s:1:"-";i:11;s:13:"Bcenmc03_1647";i:12;s:21:"Precorrin-3B synthase";i:13;s:13:"Bcenmc03_1647";i:14;s:6:"Operon";i:15;s:6:"407574";i:16;s:61:"Bcenmc03_1644;Bcenmc03_1645;Bcenmc03_1646(cobH);Bcenmc03_1647";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2233764-2233885";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2231648-2233268";i:10;s:1:"-";i:11;s:4:"guaA";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:13:"Bcenmc03_2009";i:14;s:11:"Single gene";i:15;s:7:"2254629";i:16;s:19:"Bcenmc03_2009(guaA)";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2577794-2577838";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2577450-2577771";i:10;s:1:"-";i:11;s:13:"Bcenmc03_2305";i:12;s:0:"";i:13;s:13:"Bcenmc03_2305";i:14;s:11:"Single gene";i:15;s:7:"2254734";i:16;s:13:"Bcenmc03_2305";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2754459-2754708";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2753301-2754417";i:10;s:1:"-";i:11;s:13:"Bcenmc03_2460";i:12;s:33:"Transport system permease protein";i:13;s:13:"Bcenmc03_2460";i:14;s:6:"Operon";i:15;s:6:"407737";i:16;s:27:"Bcenmc03_2459;Bcenmc03_2460";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_010508.1";i:2;s:43:"Burkholderia cenocepacia MC0-3 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3027800-3027948";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3026970-3027681";i:10;s:1:"-";i:11;s:13:"Bcenmc03_2717";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:13:"Bcenmc03_2717";i:14;s:11:"Single gene";i:15;s:7:"2254932";i:16;s:13:"Bcenmc03_2717";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}