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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
82357-82456
(-)
TPP
81342-82326 (-)
tbpA
Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein
EcSMS35_0072
Operon
DOOR ID:
403201
EcSMS35_0070
(thiQ)
,
EcSMS35_0071
(thiP)
,
EcSMS35_0072
(tbpA)
View Structure
2
808606-808750
(+)
MOCO
809748-810261 (+)
moaB
Molybdenum cofactor biosynthesis protein B
EcSMS35_0805
Operon
DOOR ID:
403345
EcSMS35_0804
(moaA)
,
EcSMS35_0805
(moaB)
,
EcSMS35_0806
(moaC)
,
EcSMS35_0807
(moaD)
,
EcSMS35_0808
(moaE)
View Structure
3
970693-970827
(+)
TPP
970861-971650 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
EcSMS35_0960
Operon
DOOR ID:
403377
EcSMS35_0960
(thiM)
,
EcSMS35_0961
(thiD)
,
EcSMS35_0962,
EcSMS35_0964
View Structure
4
1354536-1354637
(-)
yybP-ykoY
1353838-1354405 (-)
EcSMS35_1366
Probable manganese efflux pump MntP
EcSMS35_1366
Single gene
DOOR ID:
2246048
EcSMS35_1366
View Structure
5
3416753-3416901
(-)
FMN
3415995-3416649 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
EcSMS35_3339
Single gene
DOOR ID:
2246331
EcSMS35_3339
(ribB)
View Structure
6
4509208-4509398
(+)
cobalamin
4509462-4511307 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
EcSMS35_4413
Operon
DOOR ID:
404022
EcSMS35_4413
(btuB)
,
EcSMS35_4414
(murI)
View Structure
7
4540711-4540811
(-)
TPP
4538734-4540630 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EcSMS35_4442
Operon
DOOR ID:
404027
EcSMS35_4437
(thiH)
,
EcSMS35_4438
(thiG)
,
EcSMS35_4439
(thiS)
,
EcSMS35_4440
(thiF)
,
EcSMS35_4441
(thiE)
,
EcSMS35_4442
(thiC)
View Structure
8
4582872-4583068
(-)
lysine
4581430-4582780 (-)
lysC
Aspartokinase
EcSMS35_4485
Single gene
DOOR ID:
2246405
EcSMS35_4485
(lysC)
View Structure
9
4721461-4721507
(+)
mini-ykkC
4721524-4721842 (+)
sugE
EcSMS35_4620
Single gene
DOOR ID:
2245821
EcSMS35_4620
(sugE)
View Structure
10
4822636-4822751
(+)
Mg sensor
4822844-4825541 (+)
mgtA
Magnesium-translocating P-type ATPase
EcSMS35_4723
Single gene
DOOR ID:
2246187
EcSMS35_4723
(mgtA)
View Structure
Genome:
Escherichia coli SMS-3-5
(
NC_010498.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"82357-82456";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"81342-82326";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:103:"Thiamin/thiamin pyrophosphate ABC transporter; periplasmic thiamin/thiamin pyrophospate-binding protein";i:13;s:12:"EcSMS35_0072";i:14;s:6:"Operon";i:15;s:6:"403201";i:16;s:56:"EcSMS35_0070(thiQ);EcSMS35_0071(thiP);EcSMS35_0072(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"808606-808750";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"809748-810261";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:12:"EcSMS35_0805";i:14;s:6:"Operon";i:15;s:6:"403345";i:16;s:94:"EcSMS35_0804(moaA);EcSMS35_0805(moaB);EcSMS35_0806(moaC);EcSMS35_0807(moaD);EcSMS35_0808(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"970693-970827";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"970861-971650";i:10;s:1:"+";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:12:"EcSMS35_0960";i:14;s:6:"Operon";i:15;s:6:"403377";i:16;s:63:"EcSMS35_0960(thiM);EcSMS35_0961(thiD);EcSMS35_0962;EcSMS35_0964";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1354536-1354637";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1353838-1354405";i:10;s:1:"-";i:11;s:12:"EcSMS35_1366";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:12:"EcSMS35_1366";i:14;s:11:"Single gene";i:15;s:7:"2246048";i:16;s:12:"EcSMS35_1366";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3416753-3416901";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3415995-3416649";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:12:"EcSMS35_3339";i:14;s:11:"Single gene";i:15;s:7:"2246331";i:16;s:18:"EcSMS35_3339(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4509208-4509398";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4509462-4511307";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:12:"EcSMS35_4413";i:14;s:6:"Operon";i:15;s:6:"404022";i:16;s:37:"EcSMS35_4413(btuB);EcSMS35_4414(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4540711-4540811";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4538734-4540630";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"EcSMS35_4442";i:14;s:6:"Operon";i:15;s:6:"404027";i:16;s:113:"EcSMS35_4437(thiH);EcSMS35_4438(thiG);EcSMS35_4439(thiS);EcSMS35_4440(thiF);EcSMS35_4441(thiE);EcSMS35_4442(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4582872-4583068";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4581430-4582780";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:12:"EcSMS35_4485";i:14;s:11:"Single gene";i:15;s:7:"2246405";i:16;s:18:"EcSMS35_4485(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4721461-4721507";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4721524-4721842";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:12:"EcSMS35_4620";i:14;s:11:"Single gene";i:15;s:7:"2245821";i:16;s:18:"EcSMS35_4620(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010498.1";i:2;s:25:"Escherichia coli SMS-3-5 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4822636-4822751";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4822844-4825541";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:12:"EcSMS35_4723";i:14;s:11:"Single gene";i:15;s:7:"2246187";i:16;s:18:"EcSMS35_4723(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
