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Genome:
Thermotoga sp. RQ2
(
NC_010483.1
);
Phylum:
Thermotogae
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
136908-137018
(-)
TPP
136110-136857 (-)
TRQ2_0140
Thiamine thiazole synthase
TRQ2_0140
Operon
DOOR ID:
402826
TRQ2_0134,
TRQ2_0135,
TRQ2_0136,
TRQ2_0137,
TRQ2_0138,
TRQ2_0139,
TRQ2_0140
View Structure
2
893864-894064
(+)
cobalamin
894116-895010 (+)
TRQ2_0867
Periplasmic binding protein
TRQ2_0867
Operon
DOOR ID:
402978
TRQ2_0867,
TRQ2_0868,
TRQ2_0869
View Structure
3
1038425-1038546
(+)
FMN
1038605-1039652 (+)
TRQ2_0993
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
TRQ2_0993
Operon
DOOR ID:
403002
TRQ2_0993,
TRQ2_0994,
TRQ2_0995,
TRQ2_0996
(ribH)
,
TRQ2_0997
View Structure
4
1426182-1426360
(-)
lysine
1425116-1426094 (-)
TRQ2_1417
Aspartate-semialdehyde dehydrogenase
TRQ2_1417
Operon
DOOR ID:
403066
TRQ2_1410,
TRQ2_1411,
TRQ2_1412,
TRQ2_1413,
TRQ2_1414,
TRQ2_1415,
TRQ2_1416,
TRQ2_1417
View Structure
5
1853799-1853862
(+)
fluoride
1853902-1855420 (+)
TRQ2_1828
DNA mismatch repair protein MutS domain protein
TRQ2_1828
Operon
DOOR ID:
403140
TRQ2_1828,
TRQ2_1829
View Structure
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010483.1";i:2;s:19:"Thermotoga sp. RQ2 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"136908-137018";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"136110-136857";i:10;s:1:"-";i:11;s:9:"TRQ2_0140";i:12;s:27:"Thiamine thiazole synthase ";i:13;s:9:"TRQ2_0140";i:14;s:6:"Operon";i:15;s:6:"402826";i:16;s:69:"TRQ2_0134;TRQ2_0135;TRQ2_0136;TRQ2_0137;TRQ2_0138;TRQ2_0139;TRQ2_0140";i:17;s:142:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]; thiazole biosynthetic process [GO:0052837]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010483.1";i:2;s:19:"Thermotoga sp. RQ2 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"893864-894064";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"894116-895010";i:10;s:1:"+";i:11;s:9:"TRQ2_0867";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"TRQ2_0867";i:14;s:6:"Operon";i:15;s:6:"402978";i:16;s:29:"TRQ2_0867;TRQ2_0868;TRQ2_0869";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010483.1";i:2;s:19:"Thermotoga sp. RQ2 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1038425-1038546";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1038605-1039652";i:10;s:1:"+";i:11;s:9:"TRQ2_0993";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"TRQ2_0993";i:14;s:6:"Operon";i:15;s:6:"403002";i:16;s:55:"TRQ2_0993;TRQ2_0994;TRQ2_0995;TRQ2_0996(ribH);TRQ2_0997";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010483.1";i:2;s:19:"Thermotoga sp. RQ2 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1426182-1426360";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1425116-1426094";i:10;s:1:"-";i:11;s:9:"TRQ2_1417";i:12;s:36:"Aspartate-semialdehyde dehydrogenase";i:13;s:9:"TRQ2_1417";i:14;s:6:"Operon";i:15;s:6:"403066";i:16;s:79:"TRQ2_1410;TRQ2_1411;TRQ2_1412;TRQ2_1413;TRQ2_1414;TRQ2_1415;TRQ2_1416;TRQ2_1417";i:17;s:197:"isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010483.1";i:2;s:19:"Thermotoga sp. RQ2 ";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1853799-1853862";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1853902-1855420";i:10;s:1:"+";i:11;s:9:"TRQ2_1828";i:12;s:47:"DNA mismatch repair protein MutS domain protein";i:13;s:9:"TRQ2_1828";i:14;s:6:"Operon";i:15;s:6:"403140";i:16;s:19:"TRQ2_1828;TRQ2_1829";i:17;s:28:"mismatch repair [GO:0006298]";i:18;s:15:"View Structure ";}}