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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
97223-97329
(+)
THF
97369-97948 (+)
LCK_00101
Carbon starvation protein; predicted membrane protein
LCK_00101
Single gene
DOOR ID:
2240046
LCK_00101
View Structure
2
144263-144430
(+)
lysine
144508-145621 (+)
alr1
Alanine racemase
LCK_00141
Operon
DOOR ID:
400671
LCK_00141
(alr1)
,
LCK_00142
(asd)
View Structure
3
214237-214405
(+)
lysine
214479-215919 (+)
LCK_00206
Amino acid transporter
LCK_00206
Single gene
DOOR ID:
2240088
LCK_00206
View Structure
4
294851-294941
(+)
TPP
295047-295572 (+)
LCK_00279
Predicted membrane protein
LCK_00279
Operon
DOOR ID:
400699
LCK_00279,
LCK_00280
(thiM)
,
LCK_00281
(thiD)
,
LCK_00282
(thiE)
View Structure
5
610758-610854
(+)
purine
611053-612226 (+)
LCK_00587
IMP dehydrogenase/GMP reductase (05)
LCK_00587
Operon
DOOR ID:
400767
LCK_00587,
LCK_00588,
LCK_00589
(guaA)
View Structure
6
721523-721658
(+)
FMN
721724-722309 (+)
LCK_00681
Riboflavin transporter
LCK_00681
Single gene
DOOR ID:
2240223
LCK_00681
View Structure
7
732709-732753
(+)
PreQ1
732772-733768 (+)
LCK_00694
Inosine-uridine nucleoside N-ribohydrolase
LCK_00694
Operon
DOOR ID:
400787
LCK_00694,
LCK_00695
View Structure
8
788339-788384
(+)
PreQ1
788388-788946 (+)
LCK_00745
Predicted membrane protein
LCK_00745
Operon
DOOR ID:
400800
LCK_00745,
LCK_00746
(fabG)
,
LCK_00747
View Structure
9
806880-807026
(+)
FMN
807140-808184 (+)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
LCK_00762
Operon
DOOR ID:
400804
LCK_00762
(ribD)
,
LCK_00763
(ribE)
,
LCK_00764
(ribA)
,
LCK_00765
(ribH)
View Structure
10
981970-982061
(+)
TPP
982178-982484 (+)
LCK_00938
DUF77 domain-containing protein
LCK_00938
Single gene
DOOR ID:
2240306
LCK_00938
View Structure
11
1181332-1181426
(-)
purine
1179520-1179745 (-)
cspD
Cold shock protein
LCK_01134
Operon
DOOR ID:
400891
LCK_01131,
LCK_01132,
LCK_01133,
LCK_01134
(cspD)
View Structure
12
1205340-1205514
(-)
lysine
1203923-1205225 (-)
lysA
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
LCK_01156
Operon
DOOR ID:
400897
LCK_01152
(dapB)
,
LCK_01153
(dapA)
,
LCK_01154,
LCK_01155
(dapD)
,
LCK_01156
(lysA)
View Structure
13
1439677-1439780
(-)
SAM
1438421-1439579 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
LCK_01370
Operon
DOOR ID:
400948
LCK_01369,
LCK_01370
(metK)
View Structure
14
1459998-1460087
(+)
TPP
1460223-1460805 (+)
LCK_01390
Predicted membrane protein
LCK_01390
Operon
DOOR ID:
400954
LCK_01390,
LCK_01391,
LCK_01392,
LCK_01393
View Structure
Genome:
Leuconostoc citreum KM20
(
NC_010471.1
);
Phylum:
Firmicutes
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"97223-97329";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:11:"97369-97948";i:10;s:1:"+";i:11;s:9:"LCK_00101";i:12;s:53:"Carbon starvation protein; predicted membrane protein";i:13;s:9:"LCK_00101";i:14;s:11:"Single gene";i:15;s:7:"2240046";i:16;s:9:"LCK_00101";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"144263-144430";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"144508-145621";i:10;s:1:"+";i:11;s:4:"alr1";i:12;s:17:"Alanine racemase ";i:13;s:9:"LCK_00141";i:14;s:6:"Operon";i:15;s:6:"400671";i:16;s:30:"LCK_00141(alr1);LCK_00142(asd)";i:17;s:43:"D-alanine biosynthetic process [GO:0030632]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"214237-214405";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"214479-215919";i:10;s:1:"+";i:11;s:9:"LCK_00206";i:12;s:22:"Amino acid transporter";i:13;s:9:"LCK_00206";i:14;s:11:"Single gene";i:15;s:7:"2240088";i:16;s:9:"LCK_00206";i:17;s:33:"amino acid transport [GO:0006865]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"294851-294941";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"295047-295572";i:10;s:1:"+";i:11;s:9:"LCK_00279";i:12;s:26:"Predicted membrane protein";i:13;s:9:"LCK_00279";i:14;s:6:"Operon";i:15;s:6:"400699";i:16;s:57:"LCK_00279;LCK_00280(thiM);LCK_00281(thiD);LCK_00282(thiE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"610758-610854";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"611053-612226";i:10;s:1:"+";i:11;s:9:"LCK_00587";i:12;s:36:"IMP dehydrogenase/GMP reductase (05)";i:13;s:9:"LCK_00587";i:14;s:6:"Operon";i:15;s:6:"400767";i:16;s:35:"LCK_00587;LCK_00588;LCK_00589(guaA)";i:17;s:51:"purine nucleotide biosynthetic process [GO:0006164]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"721523-721658";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"721724-722309";i:10;s:1:"+";i:11;s:9:"LCK_00681";i:12;s:22:"Riboflavin transporter";i:13;s:9:"LCK_00681";i:14;s:11:"Single gene";i:15;s:7:"2240223";i:16;s:9:"LCK_00681";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"732709-732753";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"732772-733768";i:10;s:1:"+";i:11;s:9:"LCK_00694";i:12;s:42:"Inosine-uridine nucleoside N-ribohydrolase";i:13;s:9:"LCK_00694";i:14;s:6:"Operon";i:15;s:6:"400787";i:16;s:19:"LCK_00694;LCK_00695";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"788339-788384";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"788388-788946";i:10;s:1:"+";i:11;s:9:"LCK_00745";i:12;s:26:"Predicted membrane protein";i:13;s:9:"LCK_00745";i:14;s:6:"Operon";i:15;s:6:"400800";i:16;s:35:"LCK_00745;LCK_00746(fabG);LCK_00747";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"806880-807026";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"807140-808184";i:10;s:1:"+";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"LCK_00762";i:14;s:6:"Operon";i:15;s:6:"400804";i:16;s:63:"LCK_00762(ribD);LCK_00763(ribE);LCK_00764(ribA);LCK_00765(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"981970-982061";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"982178-982484";i:10;s:1:"+";i:11;s:9:"LCK_00938";i:12;s:31:"DUF77 domain-containing protein";i:13;s:9:"LCK_00938";i:14;s:11:"Single gene";i:15;s:7:"2240306";i:16;s:9:"LCK_00938";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1181332-1181426";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1179520-1179745";i:10;s:1:"-";i:11;s:4:"cspD";i:12;s:18:"Cold shock protein";i:13;s:9:"LCK_01134";i:14;s:6:"Operon";i:15;s:6:"400891";i:16;s:45:"LCK_01131;LCK_01132;LCK_01133;LCK_01134(cspD)";i:17;s:55:"regulation of transcription; DNA-templated [GO:0006355]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1205340-1205514";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1203923-1205225";i:10;s:1:"-";i:11;s:4:"lysA";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:9:"LCK_01156";i:14;s:6:"Operon";i:15;s:6:"400897";i:16;s:73:"LCK_01152(dapB);LCK_01153(dapA);LCK_01154;LCK_01155(dapD);LCK_01156(lysA)";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1439677-1439780";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1438421-1439579";i:10;s:1:"-";i:11;s:4:"metK";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:9:"LCK_01370";i:14;s:6:"Operon";i:15;s:6:"400948";i:16;s:25:"LCK_01369;LCK_01370(metK)";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_010471.1";i:2;s:24:"Leuconostoc citreum KM20";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1459998-1460087";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1460223-1460805";i:10;s:1:"+";i:11;s:9:"LCK_01390";i:12;s:26:"Predicted membrane protein";i:13;s:9:"LCK_01390";i:14;s:6:"Operon";i:15;s:6:"400954";i:16;s:39:"LCK_01390;LCK_01391;LCK_01392;LCK_01393";i:17;s:0:"";i:18;s:15:"View Structure ";}}
