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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
387919-388097
(+)
glmS
388237-390067 (+)
Daud_0360
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Daud_0360
Single gene
DOOR ID:
2235961
Daud_0360
View Structure
2
470536-470626
(-)
c-di-GMP-I
468754-470479 (-)
Daud_0429
Uncharacterized protein
Daud_0429
single gene
DOOR ID:
2235990
Daud_0429
View Structure
3
659293-659412
(+)
MOCO
659468-660452 (+)
Daud_0621
GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)
Daud_0621
Single gene
DOOR ID:
2236081
Daud_0621
View Structure
4
972931-973047
(-)
SAM
971635-972853 (-)
Daud_0911
Daud_0911
Operon
DOOR ID:
398688
Daud_0909,
Daud_0910,
Daud_0911
View Structure
5
1122618-1122759
(+)
ydaO-yuaA
1122874-1124134 (+)
Daud_1068
Lysine 2;3-aminomutase YodO family protein
Daud_1068
Single gene
DOOR ID:
2236230
Daud_1068
View Structure
6
1395227-1395414
(-)
cobalamin
1394160-1395084 (-)
Daud_1317
Periplasmic binding protein
Daud_1317
Operon
DOOR ID:
398778
Daud_1315,
Daud_1316,
Daud_1317
View Structure
7
1625296-1625416
(-)
MOCO
1624344-1625196 (-)
Daud_1542
Extracellular solute-binding protein; family 1
Daud_1542
Single gene
DOOR ID:
2236387
Daud_1542
View Structure
8
1860097-1860186
(-)
c-di-GMP-I
1859527-1859926 (-)
Daud_1768
Flagellar basal body rod protein FlgB
Daud_1768
operon
DOOR ID:
398865
Daud_1766,
Daud_1767,
Daud_1768
View Structure
9
1941831-1941917
(+)
c-di-GMP-I
1941948-1942590 (+)
Daud_1844
Metal dependent phosphohydrolase
Daud_1844
single gene
DOOR ID:
2236478
Daud_1844
View Structure
10
1958248-1958440
(-)
cobalamin
1957449-1958124 (-)
Daud_1861
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
Daud_1861
Operon
DOOR ID:
398885
Daud_1857,
Daud_1858,
Daud_1859,
Daud_1860,
Daud_1861
View Structure
11
1998484-1998604
(-)
MOCO
1997151-1998366 (-)
Daud_1895
Molybdenum cofactor synthesis domain
Daud_1895
Single gene
DOOR ID:
2236489
Daud_1895
View Structure
12
2102987-2103168
(-)
cobalamin
2100536-2102801 (-)
Daud_1996
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Daud_1996
Operon
DOOR ID:
398910
Daud_1994,
Daud_1995,
Daud_1996
View Structure
13
2125119-2125226
(-)
TPP
2124008-2125067 (-)
Daud_2019
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Daud_2019
Operon
DOOR ID:
398916
Daud_2018,
Daud_2019
View Structure
Genome:
Candidatus Desulforudis audaxviator MP104C
(
NC_010424.1
);
Phylum:
Firmicutes
a:14:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"387919-388097";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"388237-390067";i:10;s:1:"+";i:11;s:9:"Daud_0360";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Daud_0360";i:14;s:11:"Single gene";i:15;s:7:"2235961";i:16;s:9:"Daud_0360";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"470536-470626";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"468754-470479";i:10;s:1:"-";i:11;s:9:"Daud_0429";i:12;s:23:"Uncharacterized protein";i:13;s:9:"Daud_0429";i:14;s:11:"single gene";i:15;s:7:"2235990";i:16;s:9:"Daud_0429";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"659293-659412";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"659468-660452";i:10;s:1:"+";i:11;s:9:"Daud_0621";i:12;s:65:"GTP 3';8-cyclase (2) (Molybdenum cofactor biosynthesis protein A)";i:13;s:9:"Daud_0621";i:14;s:11:"Single gene";i:15;s:7:"2236081";i:16;s:9:"Daud_0621";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"972931-973047";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"971635-972853";i:10;s:1:"-";i:11;s:9:"Daud_0911";i:12;s:0:"";i:13;s:9:"Daud_0911";i:14;s:6:"Operon";i:15;s:6:"398688";i:16;s:29:"Daud_0909;Daud_0910;Daud_0911";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1122618-1122759";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1122874-1124134";i:10;s:1:"+";i:11;s:9:"Daud_1068";i:12;s:42:"Lysine 2;3-aminomutase YodO family protein";i:13;s:9:"Daud_1068";i:14;s:11:"Single gene";i:15;s:7:"2236230";i:16;s:9:"Daud_1068";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1395227-1395414";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1394160-1395084";i:10;s:1:"-";i:11;s:9:"Daud_1317";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Daud_1317";i:14;s:6:"Operon";i:15;s:6:"398778";i:16;s:29:"Daud_1315;Daud_1316;Daud_1317";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1625296-1625416";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1624344-1625196";i:10;s:1:"-";i:11;s:9:"Daud_1542";i:12;s:46:"Extracellular solute-binding protein; family 1";i:13;s:9:"Daud_1542";i:14;s:11:"Single gene";i:15;s:7:"2236387";i:16;s:9:"Daud_1542";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1860097-1860186";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1859527-1859926";i:10;s:1:"-";i:11;s:9:"Daud_1768";i:12;s:37:"Flagellar basal body rod protein FlgB";i:13;s:9:"Daud_1768";i:14;s:6:"operon";i:15;s:6:"398865";i:16;s:29:"Daud_1766;Daud_1767;Daud_1768";i:17;s:61:"bacterial-type flagellum-dependent cell motility [GO:0071973]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1941831-1941917";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1941948-1942590";i:10;s:1:"+";i:11;s:9:"Daud_1844";i:12;s:32:"Metal dependent phosphohydrolase";i:13;s:9:"Daud_1844";i:14;s:11:"single gene";i:15;s:7:"2236478";i:16;s:9:"Daud_1844";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1958248-1958440";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1957449-1958124";i:10;s:1:"-";i:11;s:9:"Daud_1861";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:9:"Daud_1861";i:14;s:6:"Operon";i:15;s:6:"398885";i:16;s:49:"Daud_1857;Daud_1858;Daud_1859;Daud_1860;Daud_1861";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1998484-1998604";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1997151-1998366";i:10;s:1:"-";i:11;s:9:"Daud_1895";i:12;s:36:"Molybdenum cofactor synthesis domain";i:13;s:9:"Daud_1895";i:14;s:11:"Single gene";i:15;s:7:"2236489";i:16;s:9:"Daud_1895";i:17;s:56:"molybdopterin cofactor biosynthetic process [GO:0032324]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2102987-2103168";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2100536-2102801";i:10;s:1:"-";i:11;s:9:"Daud_1996";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"Daud_1996";i:14;s:6:"Operon";i:15;s:6:"398910";i:16;s:29:"Daud_1994;Daud_1995;Daud_1996";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010424.1";i:2;s:43:"Candidatus Desulforudis audaxviator MP104C ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"2125119-2125226";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2124008-2125067";i:10;s:1:"-";i:11;s:9:"Daud_2019";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:9:"Daud_2019";i:14;s:6:"Operon";i:15;s:6:"398916";i:16;s:19:"Daud_2018;Daud_2019";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}