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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
513238-513350
(+)
SAM-IV
513382-514678 (+)
MAB_0512
Probable aminotransferase/cysteine desulfurase
MAB_0512
Single gene
DOOR ID:
2230128
MAB_0512
View Structure
2
552467-552689
(-)
cobalamin
551312-552365 (-)
MAB_0549c
Putative heme/hemin ABC transporter; permease protein
MAB_0549c
Operon
DOOR ID:
395554
MAB_0547c,
MAB_0548c,
MAB_0549c
View Structure
3
552713-552819
(+)
cobalamin
552847-553054 (+)
MAB_0550
MAB_0550
Operon
DOOR ID:
395555
MAB_0550,
MAB_0551
View Structure
4
867721-867896
(-)
ydaO-yuaA
866594-867710 (-)
MAB_0869c
Probable resuscitation-promoting factor RpfA
MAB_0869c
Single gene
DOOR ID:
2230237
MAB_0869c
View Structure
5
2139642-2139723
(+)
SAH
2139737-2143499 (+)
MAB_2129
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
MAB_2129
Operon
DOOR ID:
395893
MAB_2129
(metH)
,
MAB_2130,
MAB_2131,
MAB_2132
(hisG)
View Structure
6
2461580-2461677
(+)
glycine
2464780-2466616 (-)
MAB_2408c
MAB_2408c
Single gene
DOOR ID:
2230716
MAB_2408c
View Structure
7
2498027-2498099
(+)
fluoride
2498112-2498583 (+)
MAB_2439
Putative fluoride ion transporter CrcB
MAB_2439
Operon
DOOR ID:
395963
MAB_2439,
MAB_2440,
MAB_2441
View Structure
8
2682444-2682486
(-)
mini-ykkC
2682106-2682421 (-)
MAB_2640c
MAB_2640c
Operon
DOOR ID:
396000
MAB_2637c,
MAB_2638c,
MAB_2639c,
MAB_2640c
View Structure
9
2766928-2767096
(-)
ykoK
2765108-2766413 (-)
MAB_2717c
MAB_2717c
Operon
DOOR ID:
396017
MAB_2716c,
MAB_2717c
View Structure
10
3741892-3742039
(+)
SAM-IV
3742211-3743573 (+)
MAB_3687
Probable o-acetylhomoserine sulfhydrylase MetC (Homocysteine synthase)
MAB_3687
Operon
DOOR ID:
396241
MAB_3687,
MAB_3688
(metX)
,
MAB_3689,
MAB_3690
View Structure
11
4261024-4261129
(+)
TPP
4262775-4263612 (+)
MAB_4197
Phosphomethylpyrimidine kinase (ThiD)
MAB_4197
Operon
DOOR ID:
396358
MAB_4196,
MAB_4197,
MAB_4198
View Structure
12
4286819-4286934
(-)
TPP
4285566-4285764 (-)
MAB_4217c
Putative thiamine biosynthesis protein ThiS
MAB_4217c
Operon
DOOR ID:
396363
MAB_4213c,
MAB_4214c,
MAB_4215c,
MAB_4216c
(thiG)
,
MAB_4217c,
MAB_4218c
View Structure
13
4710696-4710910
(-)
cobalamin
4708290-4710561 (-)
MAB_4623c
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
MAB_4623c
Single gene
DOOR ID:
2231440
MAB_4623c
View Structure
14
4831017-4831187
(-)
ykoK
4828981-4830652 (-)
MAB_4716c
Possible membrane transport protein
MAB_4716c
Single gene
DOOR ID:
2231474
MAB_4716c
View Structure
Genome:
Mycobacterium abscessus
(
NC_010397.1
);
Phylum:
Actinobacteria
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";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"867721-867896";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"866594-867710";i:10;s:1:"-";i:11;s:9:"MAB_0869c";i:12;s:44:"Probable resuscitation-promoting factor RpfA";i:13;s:9:"MAB_0869c";i:14;s:11:"Single gene";i:15;s:7:"2230237";i:16;s:9:"MAB_0869c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2139642-2139723";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2139737-2143499";i:10;s:1:"+";i:11;s:8:"MAB_2129";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:8:"MAB_2129";i:14;s:6:"Operon";i:15;s:6:"395893";i:16;s:47:"MAB_2129(metH);MAB_2130;MAB_2131;MAB_2132(hisG)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2461580-2461677";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2464780-2466616";i:10;s:1:"-";i:11;s:9:"MAB_2408c";i:12;s:0:"";i:13;s:9:"MAB_2408c";i:14;s:11:"Single gene";i:15;s:7:"2230716";i:16;s:9:"MAB_2408c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2498027-2498099";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2498112-2498583";i:10;s:1:"+";i:11;s:8:"MAB_2439";i:12;s:38:"Putative fluoride ion transporter CrcB";i:13;s:8:"MAB_2439";i:14;s:6:"Operon";i:15;s:6:"395963";i:16;s:26:"MAB_2439;MAB_2440;MAB_2441";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2682444-2682486";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2682106-2682421";i:10;s:1:"-";i:11;s:9:"MAB_2640c";i:12;s:0:"";i:13;s:9:"MAB_2640c";i:14;s:6:"Operon";i:15;s:6:"396000";i:16;s:39:"MAB_2637c;MAB_2638c;MAB_2639c;MAB_2640c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2766928-2767096";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2765108-2766413";i:10;s:1:"-";i:11;s:9:"MAB_2717c";i:12;s:0:"";i:13;s:9:"MAB_2717c";i:14;s:6:"Operon";i:15;s:6:"396017";i:16;s:19:"MAB_2716c;MAB_2717c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3741892-3742039";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"3742211-3743573";i:10;s:1:"+";i:11;s:8:"MAB_3687";i:12;s:70:"Probable o-acetylhomoserine sulfhydrylase MetC (Homocysteine synthase)";i:13;s:8:"MAB_3687";i:14;s:6:"Operon";i:15;s:6:"396241";i:16;s:41:"MAB_3687;MAB_3688(metX);MAB_3689;MAB_3690";i:17;s:50:"cellular amino acid metabolic process [GO:0006520]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4261024-4261129";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4262775-4263612";i:10;s:1:"+";i:11;s:8:"MAB_4197";i:12;s:37:"Phosphomethylpyrimidine kinase (ThiD)";i:13;s:8:"MAB_4197";i:14;s:6:"Operon";i:15;s:6:"396358";i:16;s:26:"MAB_4196;MAB_4197;MAB_4198";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4286819-4286934";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4285566-4285764";i:10;s:1:"-";i:11;s:9:"MAB_4217c";i:12;s:43:"Putative thiamine biosynthesis protein ThiS";i:13;s:9:"MAB_4217c";i:14;s:6:"Operon";i:15;s:6:"396363";i:16;s:65:"MAB_4213c;MAB_4214c;MAB_4215c;MAB_4216c(thiG);MAB_4217c;MAB_4218c";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4710696-4710910";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4708290-4710561";i:10;s:1:"-";i:11;s:9:"MAB_4623c";i:12;s:172:"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)";i:13;s:9:"MAB_4623c";i:14;s:11:"Single gene";i:15;s:7:"2231440";i:16;s:9:"MAB_4623c";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_010397.1";i:2;s:24:"Mycobacterium abscessus ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4831017-4831187";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"4828981-4830652";i:10;s:1:"-";i:11;s:9:"MAB_4716c";i:12;s:35:"Possible membrane transport protein";i:13;s:9:"MAB_4716c";i:14;s:11:"Single gene";i:15;s:7:"2231474";i:16;s:9:"MAB_4716c";i:17;s:0:"";i:18;s:15:"View Structure ";}}