Genome: Lysinibacillus sphaericus C3-41 (NC_010382.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 176843-177033 (+)cobalamin177227-178274 (+)Bsph_0159

Transport system permease protein		Bsph_0159Operon

DOOR ID: 394596		Bsph_0159,
Bsph_0160 (fecE)		 View Structure
2 191590-191689 (+)SAM193618-197050 (+)Bsph_0176

Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)		Bsph_0176Operon

DOOR ID: 394600		Bsph_0175,
Bsph_0176		 View Structure
3 217311-217412 (+)purine217527-219120 (+)Bsph_0198

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		Bsph_0198Single gene

DOOR ID: 2227807		Bsph_0198 View Structure
4 220190-220291 (+)purine220437-221229 (+)Bsph_0200

Bsph_0200Operon

DOOR ID: 394607		Bsph_0200,
Bsph_0201		 View Structure
5 228157-228255 (+)purine228462-228951 (+)Bsph_0208

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Bsph_0208Operon

DOOR ID: 394609		Bsph_0208,
Bsph_0209,
Bsph_0210		 View Structure
6 272148-272233 (+)c-di-GMP-I272274-272436 (+)Bsph_0250

Uncharacterized protein		Bsph_0250operon

DOOR ID: 394618		Bsph_0250,
Bsph_0251 (tlpC),
Bsph_0252,
Bsph_0253		 View Structure
7 307386-307493 (+)TPP307628-308189 (+)Bsph_0285

Bsph_0285Single gene

DOOR ID: 2227836		Bsph_0285 View Structure
8 560536-560639 (+)SAM560683-560941 (+)metN

Methionine import ATP-binding protein metN 2 		Bsph_0541Operon

DOOR ID: 394669		Bsph_0541 (metN),
Bsph_0542 (metN),
Bsph_0543 (metI),
Bsph_0544		 View Structure
9 742009-742123 (+)TPP742264-744043 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Bsph_0715Single gene

DOOR ID: 2228029		Bsph_0715 (thiC) View Structure
10 768538-768714 (+)lysine768796-770260 (+)Bsph_0731

Lysine-specific permease		Bsph_0731Single gene

DOOR ID: 2228038		Bsph_0731 View Structure
11 779371-779520 (+)ydaO-yuaA779639-781478 (+)Bsph_0742

Amino acid permease		Bsph_0742Single gene

DOOR ID: 2228042		Bsph_0742 View Structure
12 781629-781730 (+)purine781852-782446 (+)Bsph_0743

Xanthine phosphoribosyltransferase (XPRTase) (2)		Bsph_0743Operon

DOOR ID: 394710		Bsph_0743,
Bsph_0744		 View Structure
13 879078-879191 (+)SAM879308-880613 (+)Bsph_0840

O-acetylhomoserine (Thiol)-lyase (9)		Bsph_0840Single gene

DOOR ID: 2228102		Bsph_0840 View Structure
14 966419-966524 (-)SAM965498-966329 (-)metQ

Lipoprotein		Bsph_0915Operon

DOOR ID: 394739		Bsph_0910,
Bsph_0911,
Bsph_0912,
Bsph_0913 (metI),
Bsph_0914 (metN),
Bsph_0915 (metQ)		 View Structure
15 982280-982324 (-)PreQ1981787-982279 (-)Bsph_0928

Citrulline related protein		Bsph_0928Single gene

DOOR ID: 2228147		Bsph_0928 View Structure
16 1018223-1018406 (+)cobalamin1019517-1020519 (+)hmuU

Hemin transport system permease protein		Bsph_0966Operon

DOOR ID: 394749		Bsph_0965,
Bsph_0966 (hmuU),
Bsph_0967,
Bsph_0968		 View Structure
17 1165553-1165747 (+)cobalamin1165942-1166236 (-)Bsph_1095

Bsph_1095Single gene

DOOR ID: 2228223		Bsph_1095 View Structure
18 1419849-1419956 (-)TPP1419247-1419814 (-)Bsph_1325

Bsph_1325Single gene

DOOR ID: 2228329		Bsph_1325 View Structure
19 1758297-1758474 (+)cobalamin1758727-1759618 (+)Bsph_1664

Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (1)		Bsph_1664Single gene

DOOR ID: 2228423		Bsph_1664 View Structure
20 1817311-1817498 (+)FMN1817648-1818305 (+)Bsph_1730

Riboflavin transporter		Bsph_1730Single gene

DOOR ID: 2228454		Bsph_1730 View Structure
21 1828705-1828801 (+)ykkC-yxkD1828911-1829268 (+)ykkC

Multidrug resistance protein		Bsph_1744Operon

DOOR ID: 394900		Bsph_1743,
Bsph_1744 (ykkC),
Bsph_1745 (ykkD)		 View Structure
22 1924519-1924697 (+)cobalamin1924795-1925038 (+)Bsph_1841

Bsph_1841Operon

DOOR ID: 394918		Bsph_1841,
Bsph_1842,
Bsph_1843,
Bsph_1844,
Bsph_1845		 View Structure
23 2101224-2101349 (+)FMN2101606-2101732 (+)Bsph_2042

Bsph_2042Single gene

DOOR ID: 2228594		Bsph_2042 View Structure
24 2101467-2101592 (+)FMN2101606-2101732 (+)Bsph_2042

Bsph_2042Single gene

DOOR ID: 2228594		Bsph_2042 View Structure
25 2257275-2257370 (+)SAM2257439-2257595 (+)Bsph_2198

Bsph_2198Single gene

DOOR ID: 2228658		Bsph_2198 View Structure
26 2361783-2361972 (+)cobalamin2362187-2362355 (+)Bsph_2309

Bsph_2309Single gene

DOOR ID: 2228700		Bsph_2309 View Structure
27 2684985-2685169 (+)cobalamin2685400-2686159 (+)Bsph_2716

Bsph_2716Single gene

DOOR ID: 2228935		Bsph_2716 View Structure
28 2688384-2688572 (+)cobalamin2688962-2689733 (+)Bsph_2718

Iron compound ABC transporter; iron compound-binding protein		Bsph_2718Single gene

DOOR ID: 2228937		Bsph_2718 View Structure
29 2751883-2752069 (+)lysine2752223-2753045 (+)Bsph_2787

Histidine-binding protein (HBP) (P29)		Bsph_2787Single gene

DOOR ID: 2228970		Bsph_2787 View Structure
30 2935014-2935209 (-)cobalamin2933703-2934825 (-)Bsph_2971

Citrate synthase		Bsph_2971Single gene

DOOR ID: 2229073		Bsph_2971 View Structure
31 2941172-2941365 (-)cobalamin2939408-2940998 (-)Bsph_2977

Nickel-binding periplasmic protein		Bsph_2977Single gene

DOOR ID: 2229075		Bsph_2977 View Structure
32 2944057-2944236 (-)cobalamin2942470-2943784 (-)Bsph_2979

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)		Bsph_2979Operon

DOOR ID: 395103		Bsph_2978,
Bsph_2979		 View Structure
33 2971035-2971145 (-)TPP2969883-2970879 (-)Bsph_3016

ABC transporter; substrate-binding protein; putative		Bsph_3016Operon

DOOR ID: 395107		Bsph_3012,
Bsph_3013,
Bsph_3014,
Bsph_3015,
Bsph_3016		 View Structure
34 2983287-2983396 (-)SAM2982252-2983188 (-)Bsph_3026

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Bsph_3026Single gene

DOOR ID: 2229097		Bsph_3026 View Structure
35 3036384-3036427 (-)PreQ13035670-3036330 (-)queC

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		Bsph_3089Operon

DOOR ID: 395116		Bsph_3086,
Bsph_3087 (ykvL),
Bsph_3088,
Bsph_3089 (queC)		 View Structure
36 3037073-3037119 (-)PreQ13036449-3036983 (-)Bsph_3090

NADPH-dependent 7-cyano-7-deazaguanine reductase (3) (7-cyano-7-carbaguanine reductase) (NADPH-dependent nitrile oxidoreductase) (PreQ(0) reductase)		Bsph_3090Single gene

DOOR ID: 2229133		Bsph_3090 View Structure
37 3202576-3202675 (-)purine3201170-3201962 (-)ydhL

Chloramphenicol resistance protein		Bsph_3281Single gene

DOOR ID: 2229264		Bsph_3281 (ydhL) View Structure
38 3369491-3369673 (-)cobalamin3367305-3368973 (-)Bsph_3446

Cobalt-precorrin-3B C(17)-methyltransferase 		Bsph_3446Operon

DOOR ID: 395172		Bsph_3442 (cbiD),
Bsph_3443,
Bsph_3444,
Bsph_3445,
Bsph_3446,
Bsph_3447		 View Structure
39 3369932-3370117 (+)cobalamin3370155-3370287 (+)Bsph_3448

Bsph_3448Operon

DOOR ID: 395173		Bsph_3448,
Bsph_3449,
Bsph_3450 (cbiN)		 View Structure
40 3473985-3474060 (+)glycine3474157-3474295 (+)Bsph_3559

Bsph_3559Single gene

DOOR ID: 2229375		Bsph_3559 View Structure
41 3486684-3486713 (-)PreQ13486513-3486663 (-)Bsph_3568

Bsph_3568Operon

DOOR ID: 395198		Bsph_3567 (comP),
Bsph_3568		 View Structure
42 3528647-3528740 (-)glycine3527278-3528382 (-)Bsph_3609

Aminomethyltransferase (0) (Glycine cleavage system T protein)		Bsph_3609Operon

DOOR ID: 395205		Bsph_3607,
Bsph_3608,
Bsph_3609		 View Structure
43 3632461-3632600 (+)ydaO-yuaA3632664-3632784 (-)Bsph_3723

Bsph_3723Single gene

DOOR ID: 2229450		Bsph_3723 View Structure
44 3749927-3750091 (-)ykoK3748716-3749682 (-)corA

Magnesium transport protein CorA		Bsph_3874Single gene

DOOR ID: 2229516		Bsph_3874 (corA) View Structure
45 3925283-3925461 (-)lysine3923924-3925136 (-)Bsph_4056

Aspartokinase 		Bsph_4056Single gene

DOOR ID: 2229592		Bsph_4056 View Structure
46 4017103-4017201 (+)TPP4017287-4018055 (+)Bsph_4147

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		Bsph_4147Operon

DOOR ID: 395301		Bsph_4147,
Bsph_4148,
Bsph_4149		 View Structure
47 4131546-4131664 (-)SAM4130064-4131261 (-)Bsph_4251

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		Bsph_4251Single gene

DOOR ID: 2229685		Bsph_4251 View Structure
48 4279467-4279667 (-)cobalamin4278745-4279327 (-)Bsph_4401

Bsph_4401Operon

DOOR ID: 395349		Bsph_4400,
Bsph_4401		 View Structure
49 4354575-4354681 (+)SAM4354865-4355507 (+)Bsph_4489

Bsph_4489Single gene

DOOR ID: 2229799		Bsph_4489 View Structure
50 4418077-4418249 (-)glmS4416083-4417886 (-)Bsph_4563

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Bsph_4563Single gene

DOOR ID: 2229835		Bsph_4563 View Structure