About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
956470-956558
(-)
THF
955813-956368 (-)
folE
GTP cyclohydrolase 1 (6) (GTP cyclohydrolase I) (GTP-CH-I)
FMG_0883
Operon
DOOR ID:
393846
FMG_0880,
FMG_0881,
FMG_0882,
FMG_0883
(folE)
View Structure
2
1262597-1262692
(-)
SAM
1261371-1262550 (-)
FMG_1158
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
FMG_1158
Single gene
DOOR ID:
2226701
FMG_1158
View Structure
3
1324222-1324363
(+)
glmS
1324386-1326207 (+)
FMG_1216
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
FMG_1216
Single gene
DOOR ID:
2226712
FMG_1216
View Structure
4
1329623-1329737
(-)
FMN
1328960-1329551 (-)
FMG_1220
Riboflavin transporter
FMG_1220
Operon
DOOR ID:
393921
FMG_1217,
FMG_1218,
FMG_1219,
FMG_1220
View Structure
5
1578351-1578445
(-)
TPP
1576982-1578284 (-)
FMG_1428
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
FMG_1428
Single gene
DOOR ID:
2226765
FMG_1428
View Structure
6
1640963-1641037
(-)
fluoride
1639751-1640921 (-)
FMG_1492
Putative Na+/H+ antiporter
FMG_1492
Single gene
DOOR ID:
2226783
FMG_1492
View Structure
Genome:
Finegoldia magna ATCC 29328
(
NC_010376.1
);
Phylum:
Firmicutes
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010376.1";i:2;s:28:"Finegoldia magna ATCC 29328 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"956470-956558";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:13:"955813-956368";i:10;s:1:"-";i:11;s:4:"folE";i:12;s:58:"GTP cyclohydrolase 1 (6) (GTP cyclohydrolase I) (GTP-CH-I)";i:13;s:8:"FMG_0883";i:14;s:6:"Operon";i:15;s:6:"393846";i:16;s:41:"FMG_0880;FMG_0881;FMG_0882;FMG_0883(folE)";i:17;s:165:"7;8-dihydroneopterin 3'-triphosphate biosynthetic process [GO:0035998]; one-carbon metabolic process [GO:0006730]; tetrahydrofolate biosynthetic process [GO:0046654]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010376.1";i:2;s:28:"Finegoldia magna ATCC 29328 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1262597-1262692";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1261371-1262550";i:10;s:1:"-";i:11;s:8:"FMG_1158";i:12;s:87:"S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)";i:13;s:8:"FMG_1158";i:14;s:11:"Single gene";i:15;s:7:"2226701";i:16;s:8:"FMG_1158";i:17;s:97:"one-carbon metabolic process [GO:0006730]; S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010376.1";i:2;s:28:"Finegoldia magna ATCC 29328 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1324222-1324363";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:15:"1324386-1326207";i:10;s:1:"+";i:11;s:8:"FMG_1216";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:8:"FMG_1216";i:14;s:11:"Single gene";i:15;s:7:"2226712";i:16;s:8:"FMG_1216";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010376.1";i:2;s:28:"Finegoldia magna ATCC 29328 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1329623-1329737";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1328960-1329551";i:10;s:1:"-";i:11;s:8:"FMG_1220";i:12;s:22:"Riboflavin transporter";i:13;s:8:"FMG_1220";i:14;s:6:"Operon";i:15;s:6:"393921";i:16;s:35:"FMG_1217;FMG_1218;FMG_1219;FMG_1220";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010376.1";i:2;s:28:"Finegoldia magna ATCC 29328 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1578351-1578445";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1576982-1578284";i:10;s:1:"-";i:11;s:8:"FMG_1428";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"FMG_1428";i:14;s:11:"Single gene";i:15;s:7:"2226765";i:16;s:8:"FMG_1428";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010376.1";i:2;s:28:"Finegoldia magna ATCC 29328 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1640963-1641037";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1639751-1640921";i:10;s:1:"-";i:11;s:8:"FMG_1492";i:12;s:26:"Putative Na+/H+ antiporter";i:13;s:8:"FMG_1492";i:14;s:11:"Single gene";i:15;s:7:"2226783";i:16;s:8:"FMG_1492";i:17;s:0:"";i:18;s:15:"View Structure ";}}
