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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
52595-52674
(-)
ZMP-ZTP
51940-52573 (-)
Caul_0043
Lysine exporter protein (LYSE/YGGA)
Caul_0043
Single gene
DOOR ID:
2222867
Caul_0043
View Structure
2
2760671-2760760
(-)
glycine
2757869-2760260 (-)
Caul_2543
TonB-dependent receptor
Caul_2543
Operon
DOOR ID:
392550
Caul_2542,
Caul_2543
View Structure
3
2970294-2970494
(+)
cobalamin
2970603-2972529 (+)
Caul_2735
TonB-dependent receptor
Caul_2735
Operon
DOOR ID:
392592
Caul_2735,
Caul_2736,
Caul_2737,
Caul_2738,
Caul_2739,
Caul_2740,
Caul_2741,
Caul_2742,
Caul_2743,
Caul_2744,
Caul_2745,
Caul_2746
View Structure
4
3441062-3441168
(-)
TPP
3439153-3440989 (-)
Caul_3175
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Caul_3175
Single gene
DOOR ID:
2224254
Caul_3175
View Structure
5
3919923-3920090
(-)
yybP-ykoY
3919313-3919871 (-)
Caul_3626
Caul_3626
Single gene
DOOR ID:
2224459
Caul_3626
View Structure
6
4176112-4176249
(+)
MOCO
4177226-4177997 (-)
ftrB
Cyclic nucleotide-binding protein
Caul_3861
Single gene
DOOR ID:
2224560
View Structure
7
4762375-4762466
(-)
glycine
4761109-4762222 (-)
Caul_4387
Glycine cleavage system T protein
Caul_4387
Operon
DOOR ID:
392910
Caul_4383,
Caul_4384,
Caul_4385,
Caul_4386,
Caul_4387
View Structure
8
5120054-5120102
(-)
mini-ykkC
5119651-5119975 (-)
Caul_4732
Caul_4732
Single gene
DOOR ID:
2224990
Caul_4732
View Structure
9
5164264-5164343
(+)
ZMP-ZTP
5164374-5165964 (+)
purH
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Caul_4782
Single gene
DOOR ID:
2225013
Caul_4782
(purH)
View Structure
Genome:
Caulobacter sp. K31
(
NC_010338.1
);
Phylum:
Alphaproteobacteria
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