Genome: Heliobacterium modesticaldum Ice1 (NC_010337.2); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 85334-85456 (-)SAM83931-85227 (-)cysD

O-acetylhomoserine sulfhydrylase

DOOR ID: 391503
HM1_0095 (metX),
HM1_0096 (cysD)
View Structure
2 120314-120402 (-)c-di-GMP-I119438-119855 (-)HM1_0136

Uncharacterized protein
HM1_0136single gene

DOOR ID: 2221586
HM1_0136 View Structure
3 563090-563272 (+)cobalamin563300-563444 (+)HM1_0214

HM1_0214Single gene

DOOR ID: 2221631
HM1_0214 View Structure
4 575906-576021 (-)TPP574511-575822 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
HM1_0202Single gene

DOOR ID: 2221625
HM1_0202 (thiC) View Structure
5 577756-577886 (-)ydaO-yuaA576364-577480 (+)HM1_0199

Metal dependent phosphohydrolase domain protein; putative
HM1_0199Single gene

DOOR ID: 2221623
HM1_0199 View Structure
6 1203045-1203106 (-)fluoride1201544-1202204 (-)HM1_0792


DOOR ID: 391706
View Structure
7 1533392-1533623 (+)glmS1533634-1535602 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
HM1_1526Single gene

DOOR ID: 2222185
HM1_1526 (glmS) View Structure
8 1555254-1555354 (+)glycine1555565-1556966 (+)HM1_1545

Sodium:alanine symporter
HM1_1545Single gene

DOOR ID: 2222196
HM1_1545 View Structure
9 1734610-1734715 (+)SAM1734745-1734877 (-)HM1_1729

HM1_1729Single gene

DOOR ID: 2222290
HM1_1729 View Structure
10 1855959-1856148 (+)cobalamin1856543-1857368 (+)HM1_1855

Conserved domain protein
HM1_1855Single gene

DOOR ID: 2222344
HM1_1855 View Structure
11 1856319-1856511 (+)cobalamin1856543-1857368 (+)HM1_1855

Conserved domain protein
HM1_1855Single gene

DOOR ID: 2222344
HM1_1855 View Structure
12 1883299-1883521 (+)lysine1883679-1884993 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
HM1_1878Single gene

DOOR ID: 2222353
HM1_1878 (lysA) View Structure
13 2030894-2030999 (-)TPP2030609-2030810 (-)thiS

Thiamine biosynthesis protein; this

DOOR ID: 391866
HM1_2030 (thiH),
HM1_2031 (thiG),
HM1_2032 (thiS)
View Structure
14 2074487-2074659 (+)cobalamin2074782-2076180 (+)HM1_2073

Thic family protein
HM1_2073Single gene

DOOR ID: 2222429
HM1_2073 View Structure
15 2146404-2146520 (+)FMN2146656-2147781 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]

DOOR ID: 391889
HM1_2141 (ribD),
HM1_2142 (ribE),
HM1_2143 (ribAB),
HM1_2144 (ribH),
HM1_2145 (pdxK)
View Structure
16 2303713-2303896 (+)lysine2304000-2304804 (+)dapB

4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase)
HM1_2327Single gene

DOOR ID: 2222493
HM1_2327 (dapB) View Structure
17 2375887-2376057 (+)cobalamin2376163-2377375 (+)cbiD

Cobalt-precorrin-5B C(1)-methyltransferase (95) (Cobalt-precorrin-6A synthase)

DOOR ID: 391936
HM1_2386 (cbiD),
HM1_2387 (cobL),
HM1_2388 (cbiL),
HM1_2389 (cbiF),
HM1_2390 (cbiG),
HM1_2391 (cbiH),
HM1_2392 (cbiJ)
View Structure
18 2488965-2489129 (-)ydaO-yuaA2488188-2488956 (-)HM1_2510

Cell wall hydrolase; sleb
HM1_2510Single gene

DOOR ID: 2222573
HM1_2510 View Structure
19 3064036-3064147 (-)ykkC-yxkD3062612-3063905 (-)purB

Adenylosuccinate lyase (ASL) (Adenylosuccinase)
HM1_3112Single gene

DOOR ID: 2222839
HM1_3112 (purB) View Structure