Genome: Pseudomonas putida GB-1 (NC_010322.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 649491-649632 (-)FMN648759-649410 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)		PputGB1_0575Single gene

DOOR ID: 2216726		PputGB1_0575 (ribB) View Structure
2 906454-906593 (-)yybP-ykoY905780-906365 (-)PputGB1_0802

PputGB1_0802Single gene

DOOR ID: 2216825		PputGB1_0802 View Structure
3 1420436-1420658 (+)cobalamin1420776-1421388 (+)PputGB1_1271

Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)		PputGB1_1271Operon

DOOR ID: 389425		PputGB1_1271,
PputGB1_1272,
PputGB1_1273,
PputGB1_1274 (cobD),
PputGB1_1275,
PputGB1_1276,
PputGB1_1277 (cobU),
PputGB1_1278 (cobT),
PputGB1_1279,
PputGB1_1280 (cobS)		 View Structure
4 1449090-1449141 (-)mini-ykkC1448746-1449064 (-)PputGB1_1298

PputGB1_1298Single gene

DOOR ID: 2216980		PputGB1_1298 View Structure
5 2310558-2310757 (-)cobalamin2309436-2310447 (-)PputGB1_2058

Periplasmic binding protein		PputGB1_2058Operon

DOOR ID: 389569		PputGB1_2054,
PputGB1_2055,
PputGB1_2056,
PputGB1_2057,
PputGB1_2058		 View Structure
6 2314329-2314537 (-)cobalamin2312093-2314220 (-)PputGB1_2060

TonB-dependent siderophore receptor		PputGB1_2060Single gene

DOOR ID: 2217331		PputGB1_2060 View Structure
7 2705598-2705815 (+)cobalamin2705916-2706984 (+)PputGB1_2421

Cobalamin biosynthesis protein CobW		PputGB1_2421Operon

DOOR ID: 389632		PputGB1_2421,
PputGB1_2422 (cobN),
PputGB1_2423		 View Structure
8 2846021-2846245 (-)cobalamin2845738-2845927 (-)PputGB1_2533

Cobalt transporter; subunit CbtB		PputGB1_2533Operon

DOOR ID: 389653		PputGB1_2529,
PputGB1_2530,
PputGB1_2531,
PputGB1_2532,
PputGB1_2533		 View Structure
9 2983057-2983171 (-)TPP2982329-2982977 (-)PputGB1_2664

Aminopyrimidine aminohydrolase 		PputGB1_2664Operon

DOOR ID: 389682		PputGB1_2663,
PputGB1_2664		 View Structure
10 3025251-3025428 (-)yybP-ykoY3024681-3025248 (-)PputGB1_2698

Putative manganese efflux pump MntP		PputGB1_2698Operon

DOOR ID: 389691		PputGB1_2697,
PputGB1_2698		 View Structure
11 5551501-5551607 (-)TPP5549464-5551345 (-)PputGB1_4975

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		PputGB1_4975Single gene

DOOR ID: 2218471		PputGB1_4975 View Structure
12 5611724-5611820 (+)SAH5611840-5613250 (+)PputGB1_5025

Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)		PputGB1_5025Operon

DOOR ID: 390171		PputGB1_5025,
PputGB1_5026		 View Structure