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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
23878-23992
(+)
FMN
24075-25158 (+)
Teth39_0021
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Teth39_0021
Operon
DOOR ID:
388731
Teth39_0021,
Teth39_0022,
Teth39_0023,
Teth39_0024
(ribH)
View Structure
2
239396-239498
(+)
TPP
239560-240199 (+)
Teth39_0212
Putative proton-coupled thiamine transporter YuaJ
Teth39_0212
Single gene
DOOR ID:
2215933
Teth39_0212
View Structure
3
241046-241208
(+)
ykoK
241588-244276 (+)
Teth39_0214
Magnesium-translocating P-type ATPase
Teth39_0214
Single gene
DOOR ID:
2215935
Teth39_0214
View Structure
4
498335-498489
(+)
glmS
498523-500350 (+)
Teth39_0472
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Teth39_0472
Single gene
DOOR ID:
2216000
Teth39_0472
View Structure
5
523252-523359
(-)
TPP
521907-523206 (-)
Teth39_0498
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Teth39_0498
Single gene
DOOR ID:
2216013
Teth39_0498
View Structure
6
524904-525014
(+)
SAM
525081-526374 (+)
Teth39_0500
Homoserine dehydrogenase
Teth39_0500
Operon
DOOR ID:
388826
Teth39_0500,
Teth39_0501,
Teth39_0502
View Structure
7
594571-594760
(-)
lysine
593109-594447 (-)
Teth39_0559
Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)
Teth39_0559
Single gene
DOOR ID:
2216032
Teth39_0559
View Structure
8
673881-673940
(+)
fluoride
674917-676243 (+)
Teth39_0625
Extracellular solute-binding protein; family 1
Teth39_0625
Single gene
DOOR ID:
2216059
Teth39_0625
View Structure
9
701033-701326
(+)
cobalamin
701430-703509 (+)
Teth39_0653
Anaerobic ribonucleoside-triphosphate reductase
Teth39_0653
Operon
DOOR ID:
388854
Teth39_0653,
Teth39_0654
View Structure
10
750630-750734
(+)
SAM
750797-751709 (+)
Teth39_0696
Methylenetetrahydrofolate reductase (0)
Teth39_0696
Operon
DOOR ID:
388864
Teth39_0696,
Teth39_0697,
Teth39_0698
View Structure
11
904376-904493
(+)
MOCO
905116-905809 (+)
Teth39_0854
Molybdopterin-guanine dinucleotide biosynthesis protein B
Teth39_0854
Single gene
DOOR ID:
2216126
Teth39_0854
View Structure
12
906025-906148
(+)
MOCO
906349-907234 (+)
Teth39_0855
Extracellular solute-binding protein; family 1
Teth39_0855
Operon
DOOR ID:
388896
Teth39_0855,
Teth39_0856,
Teth39_0857
View Structure
13
1051961-1052087
(+)
ydaO-yuaA
1052943-1053504 (-)
Teth39_0989
Teth39_0989
Single gene
DOOR ID:
2216163
Teth39_0989
View Structure
14
1129065-1129148
(+)
c-di-GMP-II
1129174-1130851 (+)
Teth39_1067
Type II secretion system protein E
Teth39_1067
Operon
DOOR ID:
388936
Teth39_1067,
Teth39_1068,
Teth39_1069,
Teth39_1070
View Structure
15
1366158-1366280
(+)
SAM
1366349-1367384 (+)
Teth39_1332
Methionine import ATP-binding protein MetN
Teth39_1332
Operon
DOOR ID:
388979
Teth39_1332,
Teth39_1333,
Teth39_1334,
Teth39_1335
View Structure
16
1465761-1465892
(-)
ydaO-yuaA
1464558-1465659 (-)
Teth39_1425
NAD/NADP octopine/nopaline dehydrogenase
Teth39_1425
Operon
DOOR ID:
388993
Teth39_1424,
Teth39_1425
View Structure
17
1503372-1503502
(-)
ydaO-yuaA
1500285-1502109 (-)
Teth39_1468
GTP-binding protein TypA
Teth39_1468
Single gene
DOOR ID:
2216254
Teth39_1468
View Structure
18
1691243-1691345
(-)
TPP
1690390-1691185 (-)
Teth39_1656
Phosphomethylpyrimidine kinase
Teth39_1656
Operon
DOOR ID:
389042
Teth39_1653,
Teth39_1654,
Teth39_1655
(thiE)
,
Teth39_1656
View Structure
19
1757095-1757194
(-)
ykkC-yxkD
1755609-1756992 (-)
Teth39_1718
Xanthine/uracil/vitamin C permease
Teth39_1718
Operon
DOOR ID:
389054
Teth39_1708,
Teth39_1709
(purH)
,
Teth39_1710
(purN)
,
Teth39_1711,
Teth39_1712,
Teth39_1713,
Teth39_1714,
Teth39_1715,
Teth39_1716,
Teth39_1717,
Teth39_1718
View Structure
20
1757179-1757280
(-)
purine
1755609-1756992 (-)
Teth39_1718
Xanthine/uracil/vitamin C permease
Teth39_1718
Operon
DOOR ID:
389054
Teth39_1708,
Teth39_1709
(purH)
,
Teth39_1710
(purN)
,
Teth39_1711,
Teth39_1712,
Teth39_1713,
Teth39_1714,
Teth39_1715,
Teth39_1716,
Teth39_1717,
Teth39_1718
View Structure
21
1760509-1760610
(-)
purine
1758917-1760372 (-)
Teth39_1720
Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)
Teth39_1720
Operon
DOOR ID:
389055
Teth39_1719
(guaA)
,
Teth39_1720
View Structure
22
1786322-1786440
(-)
FMN
1785645-1786230 (-)
Teth39_1746
Riboflavin transporter
Teth39_1746
Single gene
DOOR ID:
2216332
Teth39_1746
View Structure
23
1833128-1833232
(-)
SAM
1831882-1833070 (-)
Teth39_1790
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
Teth39_1790
Single gene
DOOR ID:
2216348
Teth39_1790
View Structure
24
1937960-1938175
(-)
cobalamin
1937087-1937837 (-)
Teth39_1886
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
Teth39_1886
Operon
DOOR ID:
389085
Teth39_1883,
Teth39_1884,
Teth39_1885,
Teth39_1886
View Structure
25
1954429-1954621
(-)
cobalamin
1953365-1954313 (-)
Teth39_1904
Periplasmic binding protein
Teth39_1904
Operon
DOOR ID:
389087
Teth39_1894
(cobS)
,
Teth39_1895
(cobU)
,
Teth39_1896,
Teth39_1897,
Teth39_1898,
Teth39_1899,
Teth39_1900,
Teth39_1901,
Teth39_1902,
Teth39_1903,
Teth39_1904
View Structure
26
2041390-2041495
(+)
glycine
2041643-2042750 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Teth39_1988
Operon
DOOR ID:
389102
Teth39_1988
(gcvT)
,
Teth39_1989,
Teth39_1990,
Teth39_1991
View Structure
27
2270957-2271016
(-)
fluoride
2270490-2270895 (-)
Teth39_2197
Putative fluoride ion transporter CrcB
Teth39_2197
Operon
DOOR ID:
389148
Teth39_2196,
Teth39_2197
View Structure
Genome:
Thermoanaerobacter pseudethanolicus ATCC 33223
(
NC_010321.1
);
Phylum:
Firmicutes
a:28:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:11:"23878-23992";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:11:"24075-25158";i:10;s:1:"+";i:11;s:11:"Teth39_0021";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:11:"Teth39_0021";i:14;s:6:"Operon";i:15;s:6:"388731";i:16;s:53:"Teth39_0021;Teth39_0022;Teth39_0023;Teth39_0024(ribH)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"239396-239498";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"239560-240199";i:10;s:1:"+";i:11;s:11:"Teth39_0212";i:12;s:49:"Putative proton-coupled thiamine transporter YuaJ";i:13;s:11:"Teth39_0212";i:14;s:11:"Single gene";i:15;s:7:"2215933";i:16;s:11:"Teth39_0212";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"241046-241208";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"241588-244276";i:10;s:1:"+";i:11;s:11:"Teth39_0214";i:12;s:38:"Magnesium-translocating P-type ATPase ";i:13;s:11:"Teth39_0214";i:14;s:11:"Single gene";i:15;s:7:"2215935";i:16;s:11:"Teth39_0214";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"498335-498489";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"498523-500350";i:10;s:1:"+";i:11;s:11:"Teth39_0472";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:11:"Teth39_0472";i:14;s:11:"Single gene";i:15;s:7:"2216000";i:16;s:11:"Teth39_0472";i:17;s:102:"carbohydrate derivative biosynthetic process [GO:1901137]; carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"523252-523359";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"521907-523206";i:10;s:1:"-";i:11;s:11:"Teth39_0498";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"Teth39_0498";i:14;s:11:"Single gene";i:15;s:7:"2216013";i:16;s:11:"Teth39_0498";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"524904-525014";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"525081-526374";i:10;s:1:"+";i:11;s:11:"Teth39_0500";i:12;s:25:"Homoserine dehydrogenase ";i:13;s:11:"Teth39_0500";i:14;s:6:"Operon";i:15;s:6:"388826";i:16;s:35:"Teth39_0500;Teth39_0501;Teth39_0502";i:17;s:135:"isoleucine biosynthetic process [GO:0009097]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"594571-594760";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"593109-594447";i:10;s:1:"-";i:11;s:11:"Teth39_0559";i:12;s:61:"Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)";i:13;s:11:"Teth39_0559";i:14;s:11:"Single gene";i:15;s:7:"2216032";i:16;s:11:"Teth39_0559";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"673881-673940";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"674917-676243";i:10;s:1:"+";i:11;s:11:"Teth39_0625";i:12;s:46:"Extracellular solute-binding protein; family 1";i:13;s:11:"Teth39_0625";i:14;s:11:"Single gene";i:15;s:7:"2216059";i:16;s:11:"Teth39_0625";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"701033-701326";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"701430-703509";i:10;s:1:"+";i:11;s:11:"Teth39_0653";i:12;s:47:"Anaerobic ribonucleoside-triphosphate reductase";i:13;s:11:"Teth39_0653";i:14;s:6:"Operon";i:15;s:6:"388854";i:16;s:23:"Teth39_0653;Teth39_0654";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"750630-750734";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"750797-751709";i:10;s:1:"+";i:11;s:11:"Teth39_0696";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:11:"Teth39_0696";i:14;s:6:"Operon";i:15;s:6:"388864";i:16;s:35:"Teth39_0696;Teth39_0697;Teth39_0698";i:17;s:88:"methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"904376-904493";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"905116-905809";i:10;s:1:"+";i:11;s:11:"Teth39_0854";i:12;s:57:"Molybdopterin-guanine dinucleotide biosynthesis protein B";i:13;s:11:"Teth39_0854";i:14;s:11:"Single 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gene";i:15;s:7:"2216163";i:16;s:11:"Teth39_0989";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1129065-1129148";i:6;s:1:"+";i:7;s:11:"c-di-GMP-II";i:8;s:0:"";i:9;s:15:"1129174-1130851";i:10;s:1:"+";i:11;s:11:"Teth39_1067";i:12;s:34:"Type II secretion system protein E";i:13;s:11:"Teth39_1067";i:14;s:6:"Operon";i:15;s:6:"388936";i:16;s:47:"Teth39_1067;Teth39_1068;Teth39_1069;Teth39_1070";i:17;s:62:"protein secretion by the type II secretion system [GO:0015628]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_010321.1";i:2;s:47:"Thermoanaerobacter pseudethanolicus ATCC 33223 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1366158-1366280";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1366349-1367384";i:10;s:1:"+";i:11;s:11:"Teth39_1332";i:12;s:43:"Methionine import ATP-binding protein MetN 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