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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
401291-401434
(+)
cobalamin
401712-403020 (+)
Caur_0312
Periplasmic binding protein
Caur_0312
Operon
DOOR ID:
384398
Caur_0312,
Caur_0313,
Caur_0314,
Caur_0315,
Caur_0316
View Structure
2
429462-429523
(+)
fluoride
429573-431100 (+)
Caur_0339
DNA mismatch repair protein MutS domain protein
Caur_0339
Operon
DOOR ID:
384405
Caur_0339,
Caur_0340
View Structure
3
474297-474419
(-)
TPP
473382-474192 (-)
Caur_0375
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Caur_0375
Operon
DOOR ID:
384411
Caur_0373,
Caur_0374,
Caur_0375
View Structure
4
554346-554461
(-)
TPP
553971-554265 (-)
Caur_0427
Caur_0427
Operon
DOOR ID:
384424
Caur_0425,
Caur_0426,
Caur_0427
View Structure
5
586740-586908
(-)
ykoK
585546-585975 (-)
Caur_0457
Caur_0457
Single gene
DOOR ID:
2205015
Caur_0457
View Structure
6
599256-599456
(+)
glmS
599607-601470 (+)
Caur_0468
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Caur_0468
Single gene
DOOR ID:
2205018
Caur_0468
View Structure
7
1086985-1087098
(-)
TPP
1085595-1086936 (-)
Caur_0794
Hydroxymethylpyrimidine transporter CytX
Caur_0794
Operon
DOOR ID:
384498
Caur_0792,
Caur_0793,
Caur_0794
View Structure
8
1089064-1089163
(+)
TPP
1089257-1089914 (+)
Caur_0797
Aminopyrimidine aminohydrolase
Caur_0797
Single gene
DOOR ID:
2205144
Caur_0797
View Structure
9
1111584-1111708
(+)
FMN
1111863-1112670 (+)
Caur_0816
Riboflavin transport system permease protein RibX
Caur_0816
Operon
DOOR ID:
384502
Caur_0816,
Caur_0817
View Structure
10
2016803-2016909
(-)
SAM
2015531-2016728 (-)
Caur_1458
Cystathionine gamma-synthase (8)
Caur_1458
Operon
DOOR ID:
384631
Caur_1455,
Caur_1456,
Caur_1457,
Caur_1458
View Structure
11
2997673-2997805
(+)
FMN
2997956-2999132 (+)
Caur_2199
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Caur_2199
Operon
DOOR ID:
384782
Caur_2199,
Caur_2200,
Caur_2201,
Caur_2202
(ribH)
View Structure
12
3441162-3441311
(-)
cobalamin
3440427-3441036 (-)
Caur_2580
Cob(I)alamin adenosyltransferase (7)
Caur_2580
Operon
DOOR ID:
384853
Caur_2573,
Caur_2574,
Caur_2575,
Caur_2576,
Caur_2577,
Caur_2578,
Caur_2579,
Caur_2580
View Structure
13
4069227-4069333
(-)
SAM
4068124-4069168 (-)
Caur_3025
Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)
Caur_3025
Operon
DOOR ID:
384946
Caur_3024,
Caur_3025
View Structure
14
4651572-4651683
(+)
SAM
4651784-4653080 (+)
Caur_3471
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Caur_3471
Operon
DOOR ID:
385042
Caur_3471,
Caur_3472
View Structure
Genome:
Chloroflexus aurantiacus J-10-fl
(
NC_010175.1
);
Phylum:
Chloroflexi
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"401291-401434";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"401712-403020";i:10;s:1:"+";i:11;s:9:"Caur_0312";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Caur_0312";i:14;s:6:"Operon";i:15;s:6:"384398";i:16;s:49:"Caur_0312;Caur_0313;Caur_0314;Caur_0315;Caur_0316";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"429462-429523";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"429573-431100";i:10;s:1:"+";i:11;s:9:"Caur_0339";i:12;s:47:"DNA mismatch repair protein MutS domain protein";i:13;s:9:"Caur_0339";i:14;s:6:"Operon";i:15;s:6:"384405";i:16;s:19:"Caur_0339;Caur_0340";i:17;s:28:"mismatch repair [GO:0006298]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"474297-474419";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"473382-474192";i:10;s:1:"-";i:11;s:9:"Caur_0375";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Caur_0375";i:14;s:6:"Operon";i:15;s:6:"384411";i:16;s:29:"Caur_0373;Caur_0374;Caur_0375";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"554346-554461";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"553971-554265";i:10;s:1:"-";i:11;s:9:"Caur_0427";i:12;s:0:"";i:13;s:9:"Caur_0427";i:14;s:6:"Operon";i:15;s:6:"384424";i:16;s:29:"Caur_0425;Caur_0426;Caur_0427";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"586740-586908";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"585546-585975";i:10;s:1:"-";i:11;s:9:"Caur_0457";i:12;s:0:"";i:13;s:9:"Caur_0457";i:14;s:11:"Single gene";i:15;s:7:"2205015";i:16;s:9:"Caur_0457";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"599256-599456";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"599607-601470";i:10;s:1:"+";i:11;s:9:"Caur_0468";i:12;s:240:"Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)";i:13;s:9:"Caur_0468";i:14;s:11:"Single gene";i:15;s:7:"2205018";i:16;s:9:"Caur_0468";i:17;s:197:"carbohydrate metabolic process [GO:0005975]; fructose 6-phosphate metabolic process [GO:0006002]; protein N-linked glycosylation [GO:0006487]; UDP-N-acetylglucosamine metabolic process [GO:0006047]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1086985-1087098";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1085595-1086936";i:10;s:1:"-";i:11;s:9:"Caur_0794";i:12;s:40:"Hydroxymethylpyrimidine transporter CytX";i:13;s:9:"Caur_0794";i:14;s:6:"Operon";i:15;s:6:"384498";i:16;s:29:"Caur_0792;Caur_0793;Caur_0794";i:17;s:31:"cytosine transport [GO:0015856]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1089064-1089163";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1089257-1089914";i:10;s:1:"+";i:11;s:9:"Caur_0797";i:12;s:31:"Aminopyrimidine aminohydrolase ";i:13;s:9:"Caur_0797";i:14;s:11:"Single gene";i:15;s:7:"2205144";i:16;s:9:"Caur_0797";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1111584-1111708";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1111863-1112670";i:10;s:1:"+";i:11;s:9:"Caur_0816";i:12;s:49:"Riboflavin transport system permease protein RibX";i:13;s:9:"Caur_0816";i:14;s:6:"Operon";i:15;s:6:"384502";i:16;s:19:"Caur_0816;Caur_0817";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2016803-2016909";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2015531-2016728";i:10;s:1:"-";i:11;s:9:"Caur_1458";i:12;s:32:"Cystathionine gamma-synthase (8)";i:13;s:9:"Caur_1458";i:14;s:6:"Operon";i:15;s:6:"384631";i:16;s:39:"Caur_1455;Caur_1456;Caur_1457;Caur_1458";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2997673-2997805";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2997956-2999132";i:10;s:1:"+";i:11;s:9:"Caur_2199";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Caur_2199";i:14;s:6:"Operon";i:15;s:6:"384782";i:16;s:45:"Caur_2199;Caur_2200;Caur_2201;Caur_2202(ribH)";i:17;s:75:"riboflavin biosynthetic process [GO:0009231]; RNA modification [GO:0009451]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3441162-3441311";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3440427-3441036";i:10;s:1:"-";i:11;s:9:"Caur_2580";i:12;s:36:"Cob(I)alamin adenosyltransferase (7)";i:13;s:9:"Caur_2580";i:14;s:6:"Operon";i:15;s:6:"384853";i:16;s:79:"Caur_2573;Caur_2574;Caur_2575;Caur_2576;Caur_2577;Caur_2578;Caur_2579;Caur_2580";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4069227-4069333";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4068124-4069168";i:10;s:1:"-";i:11;s:9:"Caur_3025";i:12;s:115:"Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)";i:13;s:9:"Caur_3025";i:14;s:6:"Operon";i:15;s:6:"384946";i:16;s:19:"Caur_3024;Caur_3025";i:17;s:58:"L-methionine salvage from methylthioadenosine [GO:0019509]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_010175.1";i:2;s:33:"Chloroflexus aurantiacus J-10-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4651572-4651683";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4651784-4653080";i:10;s:1:"+";i:11;s:9:"Caur_3471";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Caur_3471";i:14;s:6:"Operon";i:15;s:6:"385042";i:16;s:19:"Caur_3471;Caur_3472";i:17;s:56:"'de novo' L-methionine biosynthetic process [GO:0071266]";i:18;s:15:"View Structure ";}}