About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
26337-26484
(-)
FMN
25498-26200 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Bpet0024
Single gene
DOOR ID:
2200819
Bpet0024
(ribB)
View Structure
2
452447-452526
(+)
sam-alpha
453786-454404 (+)
metW
Methionine biosynthesis protein MetW
Bpet0418
Operon
DOOR ID:
382497
Bpet0417
(metX)
,
Bpet0418
(metW)
,
Bpet0419
(ampG)
,
Bpet0420
View Structure
3
535429-535592
(-)
cobalamin
533347-535363 (-)
Bpet0493
TonB-dependent outer membrane receptor
Bpet0493
Operon
DOOR ID:
382514
Bpet0492,
Bpet0493
View Structure
4
1008257-1008397
(+)
yybP-ykoY
1008475-1009468 (+)
Bpet0912
Putative Ca2+:cation antiporter; CaCA family
Bpet0912
Single gene
DOOR ID:
2201094
Bpet0912
View Structure
5
4308720-4308837
(-)
glycine
4307534-4308635 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bpet4076
Operon
DOOR ID:
383291
Bpet4075
(gcvH)
,
Bpet4076
(gcvT)
View Structure
6
4308868-4308966
(-)
glycine
4307534-4308635 (-)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Bpet4076
Operon
DOOR ID:
383291
Bpet4075
(gcvH)
,
Bpet4076
(gcvT)
View Structure
7
4317972-4318048
(-)
SAH
4316097-4316865 (-)
Bpet4085
Superoxide dismutase
Bpet4085
Single gene
DOOR ID:
2202075
Bpet4085
View Structure
8
4940988-4941088
(+)
TPP
4941160-4943074 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Bpet4684
Single gene
DOOR ID:
2202272
Bpet4684
(thiC)
View Structure
9
5031919-5032043
(-)
SAH
5030399-5031818 (-)
acyH
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Bpet4763
Single gene
DOOR ID:
2202303
Bpet4763
(acyH)
View Structure
Genome:
Bordetella petrii DSM 12804
(
NC_010170.1
);
Phylum:
Betaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"26337-26484";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:11:"25498-26200";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"Bpet0024";i:14;s:11:"Single gene";i:15;s:7:"2200819";i:16;s:14:"Bpet0024(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"452447-452526";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"453786-454404";i:10;s:1:"+";i:11;s:4:"metW";i:12;s:36:"Methionine biosynthesis protein MetW";i:13;s:8:"Bpet0418";i:14;s:6:"Operon";i:15;s:6:"382497";i:16;s:53:"Bpet0417(metX);Bpet0418(metW);Bpet0419(ampG);Bpet0420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"535429-535592";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"533347-535363";i:10;s:1:"-";i:11;s:8:"Bpet0493";i:12;s:38:"TonB-dependent outer membrane receptor";i:13;s:8:"Bpet0493";i:14;s:6:"Operon";i:15;s:6:"382514";i:16;s:17:"Bpet0492;Bpet0493";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1008257-1008397";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1008475-1009468";i:10;s:1:"+";i:11;s:8:"Bpet0912";i:12;s:44:"Putative Ca2+:cation antiporter; CaCA family";i:13;s:8:"Bpet0912";i:14;s:11:"Single gene";i:15;s:7:"2201094";i:16;s:8:"Bpet0912";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4308720-4308837";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4307534-4308635";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"Bpet4076";i:14;s:6:"Operon";i:15;s:6:"383291";i:16;s:29:"Bpet4075(gcvH);Bpet4076(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4308868-4308966";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"4307534-4308635";i:10;s:1:"-";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:8:"Bpet4076";i:14;s:6:"Operon";i:15;s:6:"383291";i:16;s:29:"Bpet4075(gcvH);Bpet4076(gcvT)";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4317972-4318048";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"4316097-4316865";i:10;s:1:"-";i:11;s:8:"Bpet4085";i:12;s:21:"Superoxide dismutase ";i:13;s:8:"Bpet4085";i:14;s:11:"Single gene";i:15;s:7:"2202075";i:16;s:8:"Bpet4085";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4940988-4941088";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4941160-4943074";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"Bpet4684";i:14;s:11:"Single gene";i:15;s:7:"2202272";i:16;s:14:"Bpet4684(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010170.1";i:2;s:28:"Bordetella petrii DSM 12804 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"5031919-5032043";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"5030399-5031818";i:10;s:1:"-";i:11;s:4:"acyH";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:8:"Bpet4763";i:14;s:11:"Single gene";i:15;s:7:"2202303";i:16;s:14:"Bpet4763(acyH)";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
