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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
338335-338433
(+)
SAM
338496-339657 (+)
metK1
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
ACL_0328
Operon
DOOR ID:
380748
ACL_0328
(metK1)
,
ACL_0329
View Structure
2
421353-421475
(+)
FMN
421552-422281 (+)
ACL_0401
Riboflavin transporter
ACL_0401
Single gene
DOOR ID:
2197933
ACL_0401
View Structure
3
869162-869269
(-)
TPP
868477-869104 (-)
ACL_0834
Putative proton-coupled thiamine transporter
ACL_0834
Single gene
DOOR ID:
2198066
ACL_0834
View Structure
4
1029330-1029409
(-)
c-di-GMP-I
1028685-1029318 (-)
ACL_1006
Hypothetical surface-anchored protein
ACL_1006
operon
DOOR ID:
380882
ACL_1005,
ACL_1006
View Structure
5
1036891-1036967
(-)
c-di-GMP-I
1036097-1036841 (-)
ACL_1013
Hypothetical surface-anchored protein
ACL_1013
operon
DOOR ID:
380884
ACL_1012,
ACL_1013
View Structure
6
1037052-1037127
(-)
c-di-GMP-I
1036097-1036841 (-)
ACL_1013
Hypothetical surface-anchored protein
ACL_1013
operon
DOOR ID:
380884
ACL_1012,
ACL_1013
View Structure
7
1055058-1055146
(-)
SAM
1054525-1054987 (-)
ACL_1029
ACL_1029
Single gene
DOOR ID:
2198107
ACL_1029
View Structure
8
1135499-1135601
(-)
purine
1134368-1135367 (-)
ACL_1096
NADH:flavin oxidoreductase family protein
ACL_1096
Operon
DOOR ID:
380901
ACL_1095
(ald)
,
ACL_1096
View Structure
9
1183213-1183288
(-)
c-di-GMP-I
1166311-1182970 (-)
ACL_1119
Uncharacterized protein
ACL_1119
operon
DOOR ID:
380906
ACL_1115,
ACL_1116,
ACL_1117,
ACL_1118,
ACL_1119
View Structure
10
1219019-1219106
(-)
THF
1218408-1218975 (-)
ACL_1164
Integral membrane protein
ACL_1164
Single gene
DOOR ID:
2198142
ACL_1164
View Structure
11
1303079-1303244
(-)
lysine
1301480-1303019 (-)
ACL_1251
ABC-type transport system; substrate-binding and permease component
ACL_1251
Operon
DOOR ID:
380929
ACL_1250,
ACL_1251
View Structure
12
1432544-1432646
(+)
purine
1432751-1434119 (+)
ACL_1371
Xanthine/uracil/vitamin C permease
ACL_1371
Single gene
DOOR ID:
2198206
ACL_1371
View Structure
Genome:
Acholeplasma laidlawii PG-8A
(
NC_010163.1
);
Phylum:
Tenericutes
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S-adenosylmethionine biosynthetic process [GO:0006556]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:13:"421353-421475";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"421552-422281";i:10;s:1:"+";i:11;s:8:"ACL_0401";i:12;s:22:"Riboflavin transporter";i:13;s:8:"ACL_0401";i:14;s:11:"Single gene";i:15;s:7:"2197933";i:16;s:8:"ACL_0401";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:13:"869162-869269";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"868477-869104";i:10;s:1:"-";i:11;s:8:"ACL_0834";i:12;s:44:"Putative proton-coupled thiamine transporter";i:13;s:8:"ACL_0834";i:14;s:11:"Single gene";i:15;s:7:"2198066";i:16;s:8:"ACL_0834";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1029330-1029409";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1028685-1029318";i:10;s:1:"-";i:11;s:8:"ACL_1006";i:12;s:37:"Hypothetical surface-anchored protein";i:13;s:8:"ACL_1006";i:14;s:6:"operon";i:15;s:6:"380882";i:16;s:17:"ACL_1005;ACL_1006";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1036891-1036967";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1036097-1036841";i:10;s:1:"-";i:11;s:8:"ACL_1013";i:12;s:37:"Hypothetical surface-anchored protein";i:13;s:8:"ACL_1013";i:14;s:6:"operon";i:15;s:6:"380884";i:16;s:17:"ACL_1012;ACL_1013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1037052-1037127";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:6:"Tandem";i:9;s:15:"1036097-1036841";i:10;s:1:"-";i:11;s:8:"ACL_1013";i:12;s:37:"Hypothetical surface-anchored protein";i:13;s:8:"ACL_1013";i:14;s:6:"operon";i:15;s:6:"380884";i:16;s:17:"ACL_1012;ACL_1013";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1055058-1055146";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1054525-1054987";i:10;s:1:"-";i:11;s:8:"ACL_1029";i:12;s:0:"";i:13;s:8:"ACL_1029";i:14;s:11:"Single gene";i:15;s:7:"2198107";i:16;s:8:"ACL_1029";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1135499-1135601";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1134368-1135367";i:10;s:1:"-";i:11;s:8:"ACL_1096";i:12;s:42:"NADH:flavin oxidoreductase family protein ";i:13;s:8:"ACL_1096";i:14;s:6:"Operon";i:15;s:6:"380901";i:16;s:22:"ACL_1095(ald);ACL_1096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1183213-1183288";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1166311-1182970";i:10;s:1:"-";i:11;s:8:"ACL_1119";i:12;s:23:"Uncharacterized protein";i:13;s:8:"ACL_1119";i:14;s:6:"operon";i:15;s:6:"380906";i:16;s:44:"ACL_1115;ACL_1116;ACL_1117;ACL_1118;ACL_1119";i:17;s:45:"polysaccharide catabolic process [GO:0000272]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1219019-1219106";i:6;s:1:"-";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1218408-1218975";i:10;s:1:"-";i:11;s:8:"ACL_1164";i:12;s:25:"Integral membrane protein";i:13;s:8:"ACL_1164";i:14;s:11:"Single gene";i:15;s:7:"2198142";i:16;s:8:"ACL_1164";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1303079-1303244";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1301480-1303019";i:10;s:1:"-";i:11;s:8:"ACL_1251";i:12;s:67:"ABC-type transport system; substrate-binding and permease component";i:13;s:8:"ACL_1251";i:14;s:6:"Operon";i:15;s:6:"380929";i:16;s:17:"ACL_1250;ACL_1251";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_010163.1";i:2;s:29:"Acholeplasma laidlawii PG-8A ";i:3;s:11:"Tenericutes";i:4;s:6:"544448";i:5;s:15:"1432544-1432646";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1432751-1434119";i:10;s:1:"+";i:11;s:8:"ACL_1371";i:12;s:34:"Xanthine/uracil/vitamin C permease";i:13;s:8:"ACL_1371";i:14;s:11:"Single gene";i:15;s:7:"2198206";i:16;s:8:"ACL_1371";i:17;s:0:"";i:18;s:15:"View Structure ";}}
